Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15658 | 5' | -55.7 | NC_004065.1 | + | 122590 | 0.66 | 0.923564 |
Target: 5'- cGUGCGGaAGCugGCCCU--GGAGGACAGc -3' miRNA: 3'- -UACGUUgUCG--CGGGAgaUCUCCUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 124959 | 0.66 | 0.91794 |
Target: 5'- -cGCGGCAGCGCCUgcacgaAGGGCGg -3' miRNA: 3'- uaCGUUGUCGCGGGagauc-UCCUGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 127778 | 0.67 | 0.893048 |
Target: 5'- -gGCGACGGgGCCCaugagcaggCggcAGAGGACGAc -3' miRNA: 3'- uaCGUUGUCgCGGGa--------Ga--UCUCCUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 143515 | 0.7 | 0.731014 |
Target: 5'- gAUGCugugAGCAGCGUCCUCgacgucugggaGGGGGACAu -3' miRNA: 3'- -UACG----UUGUCGCGGGAGa----------UCUCCUGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 182672 | 0.71 | 0.700995 |
Target: 5'- cUGCc-CAGCGCCCcCUcGAGGACAc -3' miRNA: 3'- uACGuuGUCGCGGGaGAuCUCCUGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 191280 | 0.66 | 0.934087 |
Target: 5'- aGUGCAcuuCGGgGCCCUCUcuGAGGcggaGCAGg -3' miRNA: 3'- -UACGUu--GUCgCGGGAGAu-CUCC----UGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 199806 | 0.66 | 0.91794 |
Target: 5'- -cGCGGCAcgauggggcGCGCCCggCUGGAGG-CGc -3' miRNA: 3'- uaCGUUGU---------CGCGGGa-GAUCUCCuGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 217091 | 0.68 | 0.856773 |
Target: 5'- --aCAGCGGCGUCCgUCUcuguAGAGGAUAAu -3' miRNA: 3'- uacGUUGUCGCGGG-AGA----UCUCCUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 221906 | 0.68 | 0.864463 |
Target: 5'- --uCGACGGCGCCCggcUCUGGGGcGACu- -3' miRNA: 3'- uacGUUGUCGCGGG---AGAUCUC-CUGuu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 224779 | 0.68 | 0.840783 |
Target: 5'- cUGCAACAGCGCCaccugAGcGGGCGg -3' miRNA: 3'- uACGUUGUCGCGGgaga-UCuCCUGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 230203 | 0.69 | 0.824025 |
Target: 5'- uGUGCcGCGGCGCCCUC---GGcGGCAAa -3' miRNA: 3'- -UACGuUGUCGCGGGAGaucUC-CUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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