miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15658 5' -55.7 NC_004065.1 + 47 0.67 0.905969
Target:  5'- gAUGgGGgGGCuauauuuuuGUCCUCUAGAGGGCGc -3'
miRNA:   3'- -UACgUUgUCG---------CGGGAGAUCUCCUGUu -5'
15658 5' -55.7 NC_004065.1 + 321 1.04 0.006584
Target:  5'- gAUGCAACAGCGCCCUCUAGAGGACAAa -3'
miRNA:   3'- -UACGUUGUCGCGGGAGAUCUCCUGUU- -5'
15658 5' -55.7 NC_004065.1 + 1427 0.66 0.938985
Target:  5'- -gGCAGCGGCGCCgaCgacacaauGGGGACc- -3'
miRNA:   3'- uaCGUUGUCGCGGgaGau------CUCCUGuu -5'
15658 5' -55.7 NC_004065.1 + 19581 0.67 0.899625
Target:  5'- gAUGUAGCGuGCGUCCUCcgGGuAGGAUGAc -3'
miRNA:   3'- -UACGUUGU-CGCGGGAGa-UC-UCCUGUU- -5'
15658 5' -55.7 NC_004065.1 + 22482 0.66 0.938985
Target:  5'- uUGUAGuCGaCGUCCUUUGGAGGGCGu -3'
miRNA:   3'- uACGUU-GUcGCGGGAGAUCUCCUGUu -5'
15658 5' -55.7 NC_004065.1 + 23046 0.66 0.934086
Target:  5'- -aGCGACGGUGgCCggucguGAGGACGAc -3'
miRNA:   3'- uaCGUUGUCGCgGGagau--CUCCUGUU- -5'
15658 5' -55.7 NC_004065.1 + 26423 0.67 0.899626
Target:  5'- -gGCGGCGGCGgCCUCcgAGAGcACAu -3'
miRNA:   3'- uaCGUUGUCGCgGGAGa-UCUCcUGUu -5'
15658 5' -55.7 NC_004065.1 + 27774 0.67 0.905969
Target:  5'- -cGCuGCGcCGCCgUCUGGAGGGCc- -3'
miRNA:   3'- uaCGuUGUcGCGGgAGAUCUCCUGuu -5'
15658 5' -55.7 NC_004065.1 + 27879 0.68 0.832496
Target:  5'- -cGCAgcGCAGCGCCUUCUuGGucAGGACc- -3'
miRNA:   3'- uaCGU--UGUCGCGGGAGA-UC--UCCUGuu -5'
15658 5' -55.7 NC_004065.1 + 30114 0.69 0.797584
Target:  5'- cUGCAGCcccGGCGgCCUggGGAGGGCGGg -3'
miRNA:   3'- uACGUUG---UCGCgGGAgaUCUCCUGUU- -5'
15658 5' -55.7 NC_004065.1 + 39619 0.66 0.934087
Target:  5'- aGUGCuACcGgGCCCUCcgAGGGGAgGAg -3'
miRNA:   3'- -UACGuUGuCgCGGGAGa-UCUCCUgUU- -5'
15658 5' -55.7 NC_004065.1 + 41372 0.66 0.923564
Target:  5'- -cGCcGC-GCGCCCUCgAGcGGACAu -3'
miRNA:   3'- uaCGuUGuCGCGGGAGaUCuCCUGUu -5'
15658 5' -55.7 NC_004065.1 + 68348 0.67 0.899626
Target:  5'- cUGCAGCAGCuGCCCg-UGGAGaACAc -3'
miRNA:   3'- uACGUUGUCG-CGGGagAUCUCcUGUu -5'
15658 5' -55.7 NC_004065.1 + 74444 0.7 0.740859
Target:  5'- -cGCGACGGUGCg--CUGGAGGGCGGu -3'
miRNA:   3'- uaCGUUGUCGCGggaGAUCUCCUGUU- -5'
15658 5' -55.7 NC_004065.1 + 87528 0.69 0.788455
Target:  5'- uUGCGAUcagGGCGCCCUCUGuGAaagguaucauccGGGCGAu -3'
miRNA:   3'- uACGUUG---UCGCGGGAGAU-CU------------CCUGUU- -5'
15658 5' -55.7 NC_004065.1 + 89705 0.67 0.905969
Target:  5'- -cGCAgaGCAGCGUCUUCUucaAGaAGGGCGc -3'
miRNA:   3'- uaCGU--UGUCGCGGGAGA---UC-UCCUGUu -5'
15658 5' -55.7 NC_004065.1 + 99374 0.66 0.912074
Target:  5'- -aGCGACGGCGCCgaCUGucccgacucGAGcGACAGg -3'
miRNA:   3'- uaCGUUGUCGCGGgaGAU---------CUC-CUGUU- -5'
15658 5' -55.7 NC_004065.1 + 109709 0.71 0.721082
Target:  5'- -cGC-GCGGCGaCCCUC-GGGGGGCAAc -3'
miRNA:   3'- uaCGuUGUCGC-GGGAGaUCUCCUGUU- -5'
15658 5' -55.7 NC_004065.1 + 114702 0.73 0.557698
Target:  5'- -aGCAGCAGC-CCCUCUacAGGGGAgAGa -3'
miRNA:   3'- uaCGUUGUCGcGGGAGA--UCUCCUgUU- -5'
15658 5' -55.7 NC_004065.1 + 115060 0.67 0.905969
Target:  5'- -gGCAACGGCGCgCgc--GAGGACGc -3'
miRNA:   3'- uaCGUUGUCGCGgGagauCUCCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.