Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15658 | 5' | -55.7 | NC_004065.1 | + | 321 | 1.04 | 0.006584 |
Target: 5'- gAUGCAACAGCGCCCUCUAGAGGACAAa -3' miRNA: 3'- -UACGUUGUCGCGGGAGAUCUCCUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 114702 | 0.73 | 0.557698 |
Target: 5'- -aGCAGCAGC-CCCUCUacAGGGGAgAGa -3' miRNA: 3'- uaCGUUGUCGcGGGAGA--UCUCCUgUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 182672 | 0.71 | 0.700995 |
Target: 5'- cUGCc-CAGCGCCCcCUcGAGGACAc -3' miRNA: 3'- uACGuuGUCGCGGGaGAuCUCCUGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 109709 | 0.71 | 0.721082 |
Target: 5'- -cGC-GCGGCGaCCCUC-GGGGGGCAAc -3' miRNA: 3'- uaCGuUGUCGC-GGGAGaUCUCCUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 143515 | 0.7 | 0.731014 |
Target: 5'- gAUGCugugAGCAGCGUCCUCgacgucugggaGGGGGACAu -3' miRNA: 3'- -UACG----UUGUCGCGGGAGa----------UCUCCUGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 74444 | 0.7 | 0.740859 |
Target: 5'- -cGCGACGGUGCg--CUGGAGGGCGGu -3' miRNA: 3'- uaCGUUGUCGCGggaGAUCUCCUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 87528 | 0.69 | 0.788455 |
Target: 5'- uUGCGAUcagGGCGCCCUCUGuGAaagguaucauccGGGCGAu -3' miRNA: 3'- uACGUUG---UCGCGGGAGAU-CU------------CCUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 30114 | 0.69 | 0.797584 |
Target: 5'- cUGCAGCcccGGCGgCCUggGGAGGGCGGg -3' miRNA: 3'- uACGUUG---UCGCgGGAgaUCUCCUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 230203 | 0.69 | 0.824025 |
Target: 5'- uGUGCcGCGGCGCCCUC---GGcGGCAAa -3' miRNA: 3'- -UACGuUGUCGCGGGAGaucUC-CUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 27879 | 0.68 | 0.832496 |
Target: 5'- -cGCAgcGCAGCGCCUUCUuGGucAGGACc- -3' miRNA: 3'- uaCGU--UGUCGCGGGAGA-UC--UCCUGuu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 224779 | 0.68 | 0.840783 |
Target: 5'- cUGCAACAGCGCCaccugAGcGGGCGg -3' miRNA: 3'- uACGUUGUCGCGGgaga-UCuCCUGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 217091 | 0.68 | 0.856773 |
Target: 5'- --aCAGCGGCGUCCgUCUcuguAGAGGAUAAu -3' miRNA: 3'- uacGUUGUCGCGGG-AGA----UCUCCUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 221906 | 0.68 | 0.864463 |
Target: 5'- --uCGACGGCGCCCggcUCUGGGGcGACu- -3' miRNA: 3'- uacGUUGUCGCGGG---AGAUCUC-CUGuu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 127778 | 0.67 | 0.893048 |
Target: 5'- -gGCGACGGgGCCCaugagcaggCggcAGAGGACGAc -3' miRNA: 3'- uaCGUUGUCgCGGGa--------Ga--UCUCCUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 19581 | 0.67 | 0.899625 |
Target: 5'- gAUGUAGCGuGCGUCCUCcgGGuAGGAUGAc -3' miRNA: 3'- -UACGUUGU-CGCGGGAGa-UC-UCCUGUU- -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 26423 | 0.67 | 0.899626 |
Target: 5'- -gGCGGCGGCGgCCUCcgAGAGcACAu -3' miRNA: 3'- uaCGUUGUCGCgGGAGa-UCUCcUGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 68348 | 0.67 | 0.899626 |
Target: 5'- cUGCAGCAGCuGCCCg-UGGAGaACAc -3' miRNA: 3'- uACGUUGUCG-CGGGagAUCUCcUGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 115060 | 0.67 | 0.905969 |
Target: 5'- -gGCAACGGCGCgCgc--GAGGACGc -3' miRNA: 3'- uaCGUUGUCGCGgGagauCUCCUGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 47 | 0.67 | 0.905969 |
Target: 5'- gAUGgGGgGGCuauauuuuuGUCCUCUAGAGGGCGc -3' miRNA: 3'- -UACgUUgUCG---------CGGGAGAUCUCCUGUu -5' |
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15658 | 5' | -55.7 | NC_004065.1 | + | 27774 | 0.67 | 0.905969 |
Target: 5'- -cGCuGCGcCGCCgUCUGGAGGGCc- -3' miRNA: 3'- uaCGuUGUcGCGGgAGAUCUCCUGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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