miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 3' -48.5 NC_004065.1 + 208197 0.66 0.999871
Target:  5'- aCUGCGGUgcGAAAuCGCACUCGuaugucACGu -3'
miRNA:   3'- aGAUGCCG--UUUUuGCGUGGGCuu----UGC- -5'
15659 3' -48.5 NC_004065.1 + 64038 0.66 0.999871
Target:  5'- cCUGCaGC----ACGUcCCCGAGACGg -3'
miRNA:   3'- aGAUGcCGuuuuUGCGuGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 165851 0.66 0.999937
Target:  5'- --gACGGCGGGGccggacggucucucACGguCCCGAAGgCGa -3'
miRNA:   3'- agaUGCCGUUUU--------------UGCguGGGCUUU-GC- -5'
15659 3' -48.5 NC_004065.1 + 131460 0.66 0.999923
Target:  5'- uUCUGCGGCAuaaAAAucuCGCGCCgcCGAu--- -3'
miRNA:   3'- -AGAUGCCGU---UUUu--GCGUGG--GCUuugc -5'
15659 3' -48.5 NC_004065.1 + 91463 0.66 0.999871
Target:  5'- uUCUccgGCGGCGccGAugccGCGCACgCCGAcGGCGc -3'
miRNA:   3'- -AGA---UGCCGU--UUu---UGCGUG-GGCU-UUGC- -5'
15659 3' -48.5 NC_004065.1 + 139322 0.66 0.9999
Target:  5'- --gACGGCGAGGA-GCGCagGAAACGc -3'
miRNA:   3'- agaUGCCGUUUUUgCGUGggCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 151570 0.66 0.999871
Target:  5'- gCUGCGGUu-GAGCGCggaacugagcGCCUGGGAgGa -3'
miRNA:   3'- aGAUGCCGuuUUUGCG----------UGGGCUUUgC- -5'
15659 3' -48.5 NC_004065.1 + 41421 0.66 0.999942
Target:  5'- uUCUcCGGCGAcGACcgGCUCGAGAUGg -3'
miRNA:   3'- -AGAuGCCGUUuUUGcgUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 40507 0.66 0.999874
Target:  5'- --gGCGGCAGuGGACGCuguuuggaauucgauCCCGAuAGCGa -3'
miRNA:   3'- agaUGCCGUU-UUUGCGu--------------GGGCU-UUGC- -5'
15659 3' -48.5 NC_004065.1 + 213726 0.66 0.99991
Target:  5'- --cGCGGCGAc--CGCuccgacuacaccucaGCCCGAGACu -3'
miRNA:   3'- agaUGCCGUUuuuGCG---------------UGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 33382 0.66 0.999923
Target:  5'- uUCUGCGcGCGgagccucucGAGGCGCucgcCCCGgcGCa -3'
miRNA:   3'- -AGAUGC-CGU---------UUUUGCGu---GGGCuuUGc -5'
15659 3' -48.5 NC_004065.1 + 102135 0.66 0.9999
Target:  5'- gCUGCGuGCGGAGGCagACCCGGcuCGa -3'
miRNA:   3'- aGAUGC-CGUUUUUGcgUGGGCUuuGC- -5'
15659 3' -48.5 NC_004065.1 + 12610 0.66 0.9999
Target:  5'- gUCaACGGCGcAGAGCGCgu-CGAGACGu -3'
miRNA:   3'- -AGaUGCCGU-UUUUGCGuggGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 188675 0.66 0.999871
Target:  5'- --aACGGCAGuauACGUACCgCGAAc-- -3'
miRNA:   3'- agaUGCCGUUuu-UGCGUGG-GCUUugc -5'
15659 3' -48.5 NC_004065.1 + 53452 0.66 0.999942
Target:  5'- --gACGGUGGu--CGUGCCCGAGAgGu -3'
miRNA:   3'- agaUGCCGUUuuuGCGUGGGCUUUgC- -5'
15659 3' -48.5 NC_004065.1 + 118141 0.66 0.999871
Target:  5'- gUUGCGGUAGAAugGauugucaCCGAGACc -3'
miRNA:   3'- aGAUGCCGUUUUugCgug----GGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 152302 0.66 0.999871
Target:  5'- cCUGCGGCGGcgGCGgUGCCggcgGGGACGa -3'
miRNA:   3'- aGAUGCCGUUuuUGC-GUGGg---CUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 43535 0.66 0.9999
Target:  5'- gUCcGCGcGCAGAGACGCuACuCUGAucGCGa -3'
miRNA:   3'- -AGaUGC-CGUUUUUGCG-UG-GGCUu-UGC- -5'
15659 3' -48.5 NC_004065.1 + 139466 0.66 0.999923
Target:  5'- --aACGGCAGAAGCGauuuuuCgUCGAGGCGu -3'
miRNA:   3'- agaUGCCGUUUUUGCgu----G-GGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 60700 0.66 0.999923
Target:  5'- --gACGGUGAugGCGCugcGCCCGucACGc -3'
miRNA:   3'- agaUGCCGUUuuUGCG---UGGGCuuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.