miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 3' -48.5 NC_004065.1 + 219215 0.65 0.999955
Target:  5'- aCUGCGGCAAuuAGuacaccgcucgucACGaCACCUGGuucuGCGa -3'
miRNA:   3'- aGAUGCCGUU--UU-------------UGC-GUGGGCUu---UGC- -5'
15659 3' -48.5 NC_004065.1 + 68435 0.65 0.999952
Target:  5'- --aGCGGCGGGGccgacagcuccgucGCGCGCgCCGccGCGa -3'
miRNA:   3'- agaUGCCGUUUU--------------UGCGUG-GGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 139466 0.66 0.999923
Target:  5'- --aACGGCAGAAGCGauuuuuCgUCGAGGCGu -3'
miRNA:   3'- agaUGCCGUUUUUGCgu----G-GGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 165851 0.66 0.999937
Target:  5'- --gACGGCGGGGccggacggucucucACGguCCCGAAGgCGa -3'
miRNA:   3'- agaUGCCGUUUU--------------UGCguGGGCUUU-GC- -5'
15659 3' -48.5 NC_004065.1 + 64038 0.66 0.999871
Target:  5'- cCUGCaGC----ACGUcCCCGAGACGg -3'
miRNA:   3'- aGAUGcCGuuuuUGCGuGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 208197 0.66 0.999871
Target:  5'- aCUGCGGUgcGAAAuCGCACUCGuaugucACGu -3'
miRNA:   3'- aGAUGCCG--UUUUuGCGUGGGCuu----UGC- -5'
15659 3' -48.5 NC_004065.1 + 139322 0.66 0.9999
Target:  5'- --gACGGCGAGGA-GCGCagGAAACGc -3'
miRNA:   3'- agaUGCCGUUUUUgCGUGggCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 58148 0.66 0.9999
Target:  5'- --gGCGGCGAAAuCGuCGCCggCGGAGCu -3'
miRNA:   3'- agaUGCCGUUUUuGC-GUGG--GCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 33382 0.66 0.999923
Target:  5'- uUCUGCGcGCGgagccucucGAGGCGCucgcCCCGgcGCa -3'
miRNA:   3'- -AGAUGC-CGU---------UUUUGCGu---GGGCuuUGc -5'
15659 3' -48.5 NC_004065.1 + 113264 0.66 0.999923
Target:  5'- --cAgGuGCAGAAAC-CGCCCGAcGCGg -3'
miRNA:   3'- agaUgC-CGUUUUUGcGUGGGCUuUGC- -5'
15659 3' -48.5 NC_004065.1 + 152302 0.66 0.999871
Target:  5'- cCUGCGGCGGcgGCGgUGCCggcgGGGACGa -3'
miRNA:   3'- aGAUGCCGUUuuUGC-GUGGg---CUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 99710 0.66 0.999923
Target:  5'- aUCaGCGGCAugcGGAucgaGCGCCCGugGCu -3'
miRNA:   3'- -AGaUGCCGU---UUUug--CGUGGGCuuUGc -5'
15659 3' -48.5 NC_004065.1 + 12610 0.66 0.9999
Target:  5'- gUCaACGGCGcAGAGCGCgu-CGAGACGu -3'
miRNA:   3'- -AGaUGCCGU-UUUUGCGuggGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 167503 0.66 0.9999
Target:  5'- --gACGGuCAGAGAUGCuCUCGAAgguACGg -3'
miRNA:   3'- agaUGCC-GUUUUUGCGuGGGCUU---UGC- -5'
15659 3' -48.5 NC_004065.1 + 91756 0.66 0.9999
Target:  5'- --gACGGCGGGAGCGa--CgGggGCGa -3'
miRNA:   3'- agaUGCCGUUUUUGCgugGgCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 188675 0.66 0.999871
Target:  5'- --aACGGCAGuauACGUACCgCGAAc-- -3'
miRNA:   3'- agaUGCCGUUuu-UGCGUGG-GCUUugc -5'
15659 3' -48.5 NC_004065.1 + 43535 0.66 0.9999
Target:  5'- gUCcGCGcGCAGAGACGCuACuCUGAucGCGa -3'
miRNA:   3'- -AGaUGC-CGUUUUUGCG-UG-GGCUu-UGC- -5'
15659 3' -48.5 NC_004065.1 + 118141 0.66 0.999871
Target:  5'- gUUGCGGUAGAAugGauugucaCCGAGACc -3'
miRNA:   3'- aGAUGCCGUUUUugCgug----GGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 102135 0.66 0.9999
Target:  5'- gCUGCGuGCGGAGGCagACCCGGcuCGa -3'
miRNA:   3'- aGAUGC-CGUUUUUGcgUGGGCUuuGC- -5'
15659 3' -48.5 NC_004065.1 + 60700 0.66 0.999923
Target:  5'- --gACGGUGAugGCGCugcGCCCGucACGc -3'
miRNA:   3'- agaUGCCGUUuuUGCG---UGGGCuuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.