miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 3' -48.5 NC_004065.1 + 585 1.11 0.018261
Target:  5'- uUCUACGGCAAAAACGCACCCGAAACGa -3'
miRNA:   3'- -AGAUGCCGUUUUUGCGUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 128586 0.81 0.717447
Target:  5'- gUCgGCGGCGAAGGCGCAUCCGcacGCGc -3'
miRNA:   3'- -AGaUGCCGUUUUUGCGUGGGCuu-UGC- -5'
15659 3' -48.5 NC_004065.1 + 169814 0.79 0.785962
Target:  5'- --aGCGGCAAcAGCGCGCagaaaCCGAGACGg -3'
miRNA:   3'- agaUGCCGUUuUUGCGUG-----GGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 117842 0.78 0.822164
Target:  5'- ---cUGGCGAAAACGCGCCCGAc--- -3'
miRNA:   3'- agauGCCGUUUUUGCGUGGGCUuugc -5'
15659 3' -48.5 NC_004065.1 + 187518 0.77 0.870181
Target:  5'- --gGCGGUAgagugcgaguucaAGAACGCAUCCGAGACa -3'
miRNA:   3'- agaUGCCGU-------------UUUUGCGUGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 41472 0.77 0.870932
Target:  5'- aCUAUGGUAAGcAGCGUGCgCCGggGCGu -3'
miRNA:   3'- aGAUGCCGUUU-UUGCGUG-GGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 19509 0.77 0.870932
Target:  5'- --gACGGCGGAAcCGCugCCGAAcgGCGa -3'
miRNA:   3'- agaUGCCGUUUUuGCGugGGCUU--UGC- -5'
15659 3' -48.5 NC_004065.1 + 102114 0.77 0.870932
Target:  5'- gUCUGCGGCGGcgauAGCGCcCCCGAcGCc -3'
miRNA:   3'- -AGAUGCCGUUu---UUGCGuGGGCUuUGc -5'
15659 3' -48.5 NC_004065.1 + 170428 0.77 0.870932
Target:  5'- gCUGCGGCGGAucgacgaagGACGcCGCCgGAGGCGc -3'
miRNA:   3'- aGAUGCCGUUU---------UUGC-GUGGgCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 196384 0.77 0.878317
Target:  5'- --gACGGUcGAAGCGCGCCCcGAACGc -3'
miRNA:   3'- agaUGCCGuUUUUGCGUGGGcUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 74915 0.76 0.899087
Target:  5'- gCUACGGCG--GACGCGCCgCGGucCGg -3'
miRNA:   3'- aGAUGCCGUuuUUGCGUGG-GCUuuGC- -5'
15659 3' -48.5 NC_004065.1 + 199806 0.76 0.905534
Target:  5'- --cGCGGCAcgauGGGGCGCGCCCGGcuggaGGCGc -3'
miRNA:   3'- agaUGCCGU----UUUUGCGUGGGCU-----UUGC- -5'
15659 3' -48.5 NC_004065.1 + 97120 0.76 0.905534
Target:  5'- gUCcACGGCcAGAACgGCGCCCGcgGCGa -3'
miRNA:   3'- -AGaUGCCGuUUUUG-CGUGGGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 97505 0.75 0.9234
Target:  5'- aUCUGCGGCGGAucaccccgacGAUGCGCgCGAacGACGc -3'
miRNA:   3'- -AGAUGCCGUUU----------UUGCGUGgGCU--UUGC- -5'
15659 3' -48.5 NC_004065.1 + 75043 0.75 0.9234
Target:  5'- --aGCGGCuguaccucuuGAAGACGUGCUCGAGGCGg -3'
miRNA:   3'- agaUGCCG----------UUUUUGCGUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 1932 0.75 0.927249
Target:  5'- gUCUGCGGCGucgucuccaccgcgGAGACuaCGCUCGAGACGg -3'
miRNA:   3'- -AGAUGCCGU--------------UUUUGc-GUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 108944 0.75 0.92886
Target:  5'- cCUGCGGCAGu-ACGCcgacgACCUGggGCa -3'
miRNA:   3'- aGAUGCCGUUuuUGCG-----UGGGCuuUGc -5'
15659 3' -48.5 NC_004065.1 + 99345 0.75 0.943751
Target:  5'- -aUACGGC-----CGCGCCCGAGACu -3'
miRNA:   3'- agAUGCCGuuuuuGCGUGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 77988 0.75 0.943751
Target:  5'- --cGCGGCGAGc-CGC-CCCGGGACGg -3'
miRNA:   3'- agaUGCCGUUUuuGCGuGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 24735 0.74 0.952452
Target:  5'- --aGCGGCGAGucuGGCGCACUCGuugGGCGg -3'
miRNA:   3'- agaUGCCGUUU---UUGCGUGGGCu--UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.