miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 3' -48.5 NC_004065.1 + 585 1.11 0.018261
Target:  5'- uUCUACGGCAAAAACGCACCCGAAACGa -3'
miRNA:   3'- -AGAUGCCGUUUUUGCGUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 1932 0.75 0.927249
Target:  5'- gUCUGCGGCGucgucuccaccgcgGAGACuaCGCUCGAGACGg -3'
miRNA:   3'- -AGAUGCCGU--------------UUUUGc-GUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 2834 0.69 0.997567
Target:  5'- aUCUGUGGCAGAuuuaGCugCCGAAGUGg -3'
miRNA:   3'- -AGAUGCCGUUUuug-CGugGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 12610 0.66 0.9999
Target:  5'- gUCaACGGCGcAGAGCGCgu-CGAGACGu -3'
miRNA:   3'- -AGaUGCCGU-UUUUGCGuggGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 12702 0.68 0.999404
Target:  5'- cUCUGCGGCGAuacAACGCugcgaguaugaucaaACCUacGACGa -3'
miRNA:   3'- -AGAUGCCGUUu--UUGCG---------------UGGGcuUUGC- -5'
15659 3' -48.5 NC_004065.1 + 17082 0.67 0.999732
Target:  5'- aCUGCGGCGucaguuuCGgACCCGAu--- -3'
miRNA:   3'- aGAUGCCGUuuuu---GCgUGGGCUuugc -5'
15659 3' -48.5 NC_004065.1 + 17299 0.68 0.999204
Target:  5'- -gUGCGGCGGAGACaacgGC-CUCGGAGCc -3'
miRNA:   3'- agAUGCCGUUUUUG----CGuGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 18327 0.68 0.999204
Target:  5'- gCUGCGGCGGu--CGCugCCGccauCGu -3'
miRNA:   3'- aGAUGCCGUUuuuGCGugGGCuuu-GC- -5'
15659 3' -48.5 NC_004065.1 + 18911 0.67 0.999662
Target:  5'- --cGCuGGCGAAGAUGCuACaaGAGACGg -3'
miRNA:   3'- agaUG-CCGUUUUUGCG-UGggCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 19509 0.77 0.870932
Target:  5'- --gACGGCGGAAcCGCugCCGAAcgGCGa -3'
miRNA:   3'- agaUGCCGUUUUuGCGugGGCUU--UGC- -5'
15659 3' -48.5 NC_004065.1 + 19631 0.71 0.990553
Target:  5'- aCUACccaGGCccGAGCGCGagaCCGAGACGc -3'
miRNA:   3'- aGAUG---CCGuuUUUGCGUg--GGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 19699 0.7 0.996441
Target:  5'- --aACGGCuGAAACGCGgaggcgugcggccaUCCGAGAUGg -3'
miRNA:   3'- agaUGCCGuUUUUGCGU--------------GGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 20922 0.67 0.999578
Target:  5'- --aGCGGCGugguggAAGACGCGuacUCCGAGGCc -3'
miRNA:   3'- agaUGCCGU------UUUUGCGU---GGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 21600 0.67 0.999692
Target:  5'- aCUACaGCAauaccaaaGAAaagauguugaccgccGCGCACgCCGAGGCGg -3'
miRNA:   3'- aGAUGcCGU--------UUU---------------UGCGUG-GGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 21742 0.68 0.99882
Target:  5'- -gUGCGGCAAcAGCGgCACCUGcguGugGa -3'
miRNA:   3'- agAUGCCGUUuUUGC-GUGGGCu--UugC- -5'
15659 3' -48.5 NC_004065.1 + 22799 0.66 0.999923
Target:  5'- gCUGgGGuUGAGGugGgAUCCGGAACGg -3'
miRNA:   3'- aGAUgCC-GUUUUugCgUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 24681 0.7 0.996609
Target:  5'- aUCggaGGCGAcGACGCugCCGAugAACu -3'
miRNA:   3'- -AGaugCCGUUuUUGCGugGGCU--UUGc -5'
15659 3' -48.5 NC_004065.1 + 24735 0.74 0.952452
Target:  5'- --aGCGGCGAGucuGGCGCACUCGuugGGCGg -3'
miRNA:   3'- agaUGCCGUUU---UUGCGUGGGCu--UUGC- -5'
15659 3' -48.5 NC_004065.1 + 26629 0.72 0.98618
Target:  5'- -gUGCGGCGAcagcggGAGCaGCGuCCCGGAAUGa -3'
miRNA:   3'- agAUGCCGUU------UUUG-CGU-GGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 29715 0.69 0.998288
Target:  5'- --aGCGGCG--GACGcCGCCCaGGACGa -3'
miRNA:   3'- agaUGCCGUuuUUGC-GUGGGcUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.