miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 3' -48.5 NC_004065.1 + 29905 0.67 0.999655
Target:  5'- uUCgcCGGCGAggaggGAcgcgucuacaucuACGCGCCCGAcgucGACGa -3'
miRNA:   3'- -AGauGCCGUU-----UU-------------UGCGUGGGCU----UUGC- -5'
15659 3' -48.5 NC_004065.1 + 30872 0.68 0.99882
Target:  5'- gUCgACGGCGGGuucgaGCGCCCGcaGGGCGu -3'
miRNA:   3'- -AGaUGCCGUUUuug--CGUGGGC--UUUGC- -5'
15659 3' -48.5 NC_004065.1 + 31070 0.67 0.999662
Target:  5'- -----cGCGAGGACGCGCaCCGcGACGg -3'
miRNA:   3'- agaugcCGUUUUUGCGUG-GGCuUUGC- -5'
15659 3' -48.5 NC_004065.1 + 31281 0.66 0.999942
Target:  5'- gCU-CGGCAGGGcCGCGgCCGAGGg- -3'
miRNA:   3'- aGAuGCCGUUUUuGCGUgGGCUUUgc -5'
15659 3' -48.5 NC_004065.1 + 31655 0.68 0.999475
Target:  5'- --cACGGCGuuGACGCcgaccACCCG--GCGg -3'
miRNA:   3'- agaUGCCGUuuUUGCG-----UGGGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 32924 0.69 0.997567
Target:  5'- gCUGC-GCGAGAAcCGCGCCCGcGAgGa -3'
miRNA:   3'- aGAUGcCGUUUUU-GCGUGGGCuUUgC- -5'
15659 3' -48.5 NC_004065.1 + 33271 0.72 0.984422
Target:  5'- aUCUugGGCAGGcGCaGCACgCCGAuguugggguaGGCGg -3'
miRNA:   3'- -AGAugCCGUUUuUG-CGUG-GGCU----------UUGC- -5'
15659 3' -48.5 NC_004065.1 + 33382 0.66 0.999923
Target:  5'- uUCUGCGcGCGgagccucucGAGGCGCucgcCCCGgcGCa -3'
miRNA:   3'- -AGAUGC-CGU---------UUUUGCGu---GGGCuuUGc -5'
15659 3' -48.5 NC_004065.1 + 35062 0.69 0.997567
Target:  5'- -aUugGGCcAGGugGUGCCCGG-ACGg -3'
miRNA:   3'- agAugCCGuUUUugCGUGGGCUuUGC- -5'
15659 3' -48.5 NC_004065.1 + 36110 0.68 0.999204
Target:  5'- --gGCGGCAAcgGGGcCGCugCCGGcGGCGg -3'
miRNA:   3'- agaUGCCGUU--UUU-GCGugGGCU-UUGC- -5'
15659 3' -48.5 NC_004065.1 + 37465 0.67 0.999834
Target:  5'- --gGCGGCGucuGGGCGCugcGCuuGAGGCa -3'
miRNA:   3'- agaUGCCGUu--UUUGCG---UGggCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 40507 0.66 0.999874
Target:  5'- --gGCGGCAGuGGACGCuguuuggaauucgauCCCGAuAGCGa -3'
miRNA:   3'- agaUGCCGUU-UUUGCGu--------------GGGCU-UUGC- -5'
15659 3' -48.5 NC_004065.1 + 40845 0.7 0.993757
Target:  5'- gUCUAC-GCucGAAACGCGCUCGAGAg- -3'
miRNA:   3'- -AGAUGcCGu-UUUUGCGUGGGCUUUgc -5'
15659 3' -48.5 NC_004065.1 + 41235 0.67 0.999732
Target:  5'- gUCUACGGCGAcgauuAUGUGCCuCGcguGGACGu -3'
miRNA:   3'- -AGAUGCCGUUuu---UGCGUGG-GC---UUUGC- -5'
15659 3' -48.5 NC_004065.1 + 41421 0.66 0.999942
Target:  5'- uUCUcCGGCGAcGACcgGCUCGAGAUGg -3'
miRNA:   3'- -AGAuGCCGUUuUUGcgUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 41472 0.77 0.870932
Target:  5'- aCUAUGGUAAGcAGCGUGCgCCGggGCGu -3'
miRNA:   3'- aGAUGCCGUUU-UUGCGUG-GGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 43166 0.67 0.999834
Target:  5'- --gACGGCGGGAACGgCAgacaCCGAcacaGACGa -3'
miRNA:   3'- agaUGCCGUUUUUGC-GUg---GGCU----UUGC- -5'
15659 3' -48.5 NC_004065.1 + 43327 0.67 0.999834
Target:  5'- aUCUGgccCGGCGGGGACGC-CCCac-GCGc -3'
miRNA:   3'- -AGAU---GCCGUUUUUGCGuGGGcuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 43535 0.66 0.9999
Target:  5'- gUCcGCGcGCAGAGACGCuACuCUGAucGCGa -3'
miRNA:   3'- -AGaUGC-CGUUUUUGCG-UG-GGCUu-UGC- -5'
15659 3' -48.5 NC_004065.1 + 43710 0.67 0.999732
Target:  5'- gCUGCGGCGGAuGAUGUGgCUGcGACGa -3'
miRNA:   3'- aGAUGCCGUUU-UUGCGUgGGCuUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.