miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 5' -45.8 NC_004065.1 + 142371 0.66 1
Target:  5'- aUGCGgucgggggugUCGAagGCGCGcagUUCGCGcUCg -3'
miRNA:   3'- -ACGCaaa-------AGCU--UGUGCaa-AAGCGC-AG- -5'
15659 5' -45.8 NC_004065.1 + 88682 0.66 1
Target:  5'- cGCGag--CGGACgACGUc--CGCGUCg -3'
miRNA:   3'- aCGCaaaaGCUUG-UGCAaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 203220 0.66 0.999999
Target:  5'- aUGUGgacggaggcUUgGAGCACGUguacUCGUGUCg -3'
miRNA:   3'- -ACGCaa-------AAgCUUGUGCAaa--AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 75155 0.66 0.999999
Target:  5'- gGCGagcaggaCGAAgACGUg-UCGCGUCa -3'
miRNA:   3'- aCGCaaaa---GCUUgUGCAaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 123062 0.66 0.999999
Target:  5'- cGCGcaugCGAGCGCGgaugCGCGa- -3'
miRNA:   3'- aCGCaaaaGCUUGUGCaaaaGCGCag -5'
15659 5' -45.8 NC_004065.1 + 142792 0.66 0.999999
Target:  5'- cGCGUcg-CGAGgACGUcgugaaacCGCGUCg -3'
miRNA:   3'- aCGCAaaaGCUUgUGCAaaa-----GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 145928 0.67 0.999998
Target:  5'- gGCGgucgUCGAAUcCGggaUCGUGUCg -3'
miRNA:   3'- aCGCaaa-AGCUUGuGCaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 37641 0.67 0.999998
Target:  5'- cGCagGUcUUCGAuagugGCACGguaaugcgUCGCGUCg -3'
miRNA:   3'- aCG--CAaAAGCU-----UGUGCaaa-----AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 51621 0.67 0.999998
Target:  5'- aGCGguc-CGGACAgGgggcagaagUCGCGUCg -3'
miRNA:   3'- aCGCaaaaGCUUGUgCaaa------AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 49578 0.67 0.999998
Target:  5'- uUGCGUcaaaaugcUCGAAUGCGgucuuguUUUUCGCGUg -3'
miRNA:   3'- -ACGCAaa------AGCUUGUGC-------AAAAGCGCAg -5'
15659 5' -45.8 NC_004065.1 + 146964 0.67 0.999997
Target:  5'- -uCGUcgUCGAGCGCGgcgUCGCccauGUCg -3'
miRNA:   3'- acGCAaaAGCUUGUGCaaaAGCG----CAG- -5'
15659 5' -45.8 NC_004065.1 + 139678 0.67 0.999997
Target:  5'- cGCGUUcaUCGcGACGCGgacgagUUCGCGg- -3'
miRNA:   3'- aCGCAAa-AGC-UUGUGCaa----AAGCGCag -5'
15659 5' -45.8 NC_004065.1 + 132365 0.67 0.999997
Target:  5'- gGCGguagcaCGGGCAgGccgUCGCGUCg -3'
miRNA:   3'- aCGCaaaa--GCUUGUgCaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 88946 0.67 0.999997
Target:  5'- aGaCGUUcUUGAGCACGggcucgCGCGUg -3'
miRNA:   3'- aC-GCAAaAGCUUGUGCaaaa--GCGCAg -5'
15659 5' -45.8 NC_004065.1 + 40586 0.67 0.999997
Target:  5'- cGgGUcucUCGAGCGCGUUUcgaGCGUa -3'
miRNA:   3'- aCgCAaa-AGCUUGUGCAAAag-CGCAg -5'
15659 5' -45.8 NC_004065.1 + 192619 0.67 0.999997
Target:  5'- cGCGccgUCGGACAC-----CGCGUCg -3'
miRNA:   3'- aCGCaaaAGCUUGUGcaaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 42937 0.67 0.999996
Target:  5'- cUGCagcucCGAACGCGagcagcUUCGCGUCa -3'
miRNA:   3'- -ACGcaaaaGCUUGUGCaa----AAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 207668 0.67 0.999996
Target:  5'- gGCGag-UCGAGCACGga--CGUGUg -3'
miRNA:   3'- aCGCaaaAGCUUGUGCaaaaGCGCAg -5'
15659 5' -45.8 NC_004065.1 + 132365 0.67 0.999996
Target:  5'- gGCGUUcaccUCGAAC-CGccg-CGCGUCc -3'
miRNA:   3'- aCGCAAa---AGCUUGuGCaaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 78738 0.67 0.999996
Target:  5'- gGCGgugUCGGGCGCGcUUgaCGCGg- -3'
miRNA:   3'- aCGCaaaAGCUUGUGC-AAaaGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.