miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 5' -45.8 NC_004065.1 + 323 0.72 0.998273
Target:  5'- uUGUGUcgUUUCGggUGCGUUUUUGCcGUa -3'
miRNA:   3'- -ACGCA--AAAGCuuGUGCAAAAGCG-CAg -5'
15659 5' -45.8 NC_004065.1 + 135650 0.72 0.997929
Target:  5'- cUGaCGgggUCGGGCGCGgccggCGCGUCa -3'
miRNA:   3'- -AC-GCaaaAGCUUGUGCaaaa-GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 198525 0.72 0.997929
Target:  5'- cGCGgugUCGGACGCGUUgcacugcUCGUGgUCg -3'
miRNA:   3'- aCGCaaaAGCUUGUGCAAa------AGCGC-AG- -5'
15659 5' -45.8 NC_004065.1 + 124521 0.73 0.997067
Target:  5'- cGCGUUcUCGGGCACGUg--CGCc-- -3'
miRNA:   3'- aCGCAAaAGCUUGUGCAaaaGCGcag -5'
15659 5' -45.8 NC_004065.1 + 67677 0.73 0.996535
Target:  5'- gUGCGgg-UCGAACACGUaggUCGCc-- -3'
miRNA:   3'- -ACGCaaaAGCUUGUGCAaa-AGCGcag -5'
15659 5' -45.8 NC_004065.1 + 37964 0.73 0.995233
Target:  5'- cGCGUgucCGGGCACGa---CGCGUCg -3'
miRNA:   3'- aCGCAaaaGCUUGUGCaaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 191090 0.74 0.993559
Target:  5'- gGCGUgguuauuucUCGcGCACGgugUCGCGUCg -3'
miRNA:   3'- aCGCAaa-------AGCuUGUGCaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 41006 0.74 0.992347
Target:  5'- gGCGUcgUCGAACACGUUgaccuccgugagUC-CGUCg -3'
miRNA:   3'- aCGCAaaAGCUUGUGCAAa-----------AGcGCAG- -5'
15659 5' -45.8 NC_004065.1 + 199980 0.78 0.949941
Target:  5'- cUGCGgg-UCGGGCAgGauccUUUUCGCGUCg -3'
miRNA:   3'- -ACGCaaaAGCUUGUgC----AAAAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 117586 0.78 0.945471
Target:  5'- gGCGguaagUCGGGCGCGUUUUCGCc-- -3'
miRNA:   3'- aCGCaaa--AGCUUGUGCAAAAGCGcag -5'
15659 5' -45.8 NC_004065.1 + 549 1.12 0.029432
Target:  5'- cUGCGUUUUCGAACACGUUUUCGCGUCg -3'
miRNA:   3'- -ACGCAAAAGCUUGUGCAAAAGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.