miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15661 5' -55.6 NC_004065.1 + 56120 0.66 0.96923
Target:  5'- cCGgaCGAcGGcGGCGCUCGCcUUCugcagccuCGGCg -3'
miRNA:   3'- -GCgaGCU-CC-UUGCGAGCG-AAGu-------GCCG- -5'
15661 5' -55.6 NC_004065.1 + 24214 0.66 0.970368
Target:  5'- aCGCgguuggCGAGGuuuCGCUCGCgccaggacaggaugUCguuguugguGCGGCa -3'
miRNA:   3'- -GCGa-----GCUCCuu-GCGAGCGa-------------AG---------UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 201380 0.66 0.96923
Target:  5'- uCGC-CGGGGggUGCcacgucgaCGCacagaugcgUCGCGGCg -3'
miRNA:   3'- -GCGaGCUCCuuGCGa-------GCGa--------AGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 100769 0.66 0.96625
Target:  5'- aGCUgUGGGGcGgGCUCaGCUUCgcGCGGUg -3'
miRNA:   3'- gCGA-GCUCCuUgCGAG-CGAAG--UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 153889 0.66 0.963072
Target:  5'- uGUUCGuGGGGAccCGCUgGCggUCugGGUa -3'
miRNA:   3'- gCGAGC-UCCUU--GCGAgCGa-AGugCCG- -5'
15661 5' -55.6 NC_004065.1 + 63503 0.66 0.972018
Target:  5'- aGCcaggUGcGGAugGcCUCGCccUCGCGGCc -3'
miRNA:   3'- gCGa---GCuCCUugC-GAGCGa-AGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 109808 0.66 0.972018
Target:  5'- aCGUUCGAcGaGAACGCccucgUCGCcgUCcugcuGCGGCg -3'
miRNA:   3'- -GCGAGCU-C-CUUGCG-----AGCGa-AG-----UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 88919 0.66 0.96625
Target:  5'- cCGCUCGcGGGugcuggcgGCGCUCGaCUcgACGGg -3'
miRNA:   3'- -GCGAGCuCCU--------UGCGAGC-GAagUGCCg -5'
15661 5' -55.6 NC_004065.1 + 224636 0.66 0.963072
Target:  5'- aCGC-CGAcGGAACGC-CGCcaCAUGGa -3'
miRNA:   3'- -GCGaGCU-CCUUGCGaGCGaaGUGCCg -5'
15661 5' -55.6 NC_004065.1 + 41437 0.66 0.963072
Target:  5'- gGCUCGAGauGGACG-UC-CUUUugGGCc -3'
miRNA:   3'- gCGAGCUC--CUUGCgAGcGAAGugCCG- -5'
15661 5' -55.6 NC_004065.1 + 92041 0.66 0.96923
Target:  5'- gGCUCuuGGcGCGCUCGaggcaucUCACGcGCg -3'
miRNA:   3'- gCGAGcuCCuUGCGAGCga-----AGUGC-CG- -5'
15661 5' -55.6 NC_004065.1 + 41189 0.66 0.972018
Target:  5'- gGCUCGAGGAccuCGCcCGgUgucucugugcUCAgGGCc -3'
miRNA:   3'- gCGAGCUCCUu--GCGaGCgA----------AGUgCCG- -5'
15661 5' -55.6 NC_004065.1 + 41621 0.66 0.974619
Target:  5'- cCGCUCGAGGGcGCGCg-GCgggagacgACGGUc -3'
miRNA:   3'- -GCGAGCUCCU-UGCGagCGaag-----UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 170725 0.66 0.96923
Target:  5'- aGCUCGccGAGCGgUCuGCg--GCGGCa -3'
miRNA:   3'- gCGAGCucCUUGCgAG-CGaagUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 140281 0.66 0.963072
Target:  5'- aGCgaaccCGAcGGAGCcgUCGCUUCuCGGCg -3'
miRNA:   3'- gCGa----GCU-CCUUGcgAGCGAAGuGCCG- -5'
15661 5' -55.6 NC_004065.1 + 201458 0.66 0.959691
Target:  5'- gGCUCGAGccGGACGCUcccCGCgagaUCcCGGUc -3'
miRNA:   3'- gCGAGCUC--CUUGCGA---GCGa---AGuGCCG- -5'
15661 5' -55.6 NC_004065.1 + 73281 0.66 0.959691
Target:  5'- gGCaaCGAGGugaagGGCGuCUCGCUcgUgGCGGCa -3'
miRNA:   3'- gCGa-GCUCC-----UUGC-GAGCGA--AgUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 66811 0.66 0.963072
Target:  5'- aCGUcCGAGGGACGCgucCGUugauUUC-CGGUa -3'
miRNA:   3'- -GCGaGCUCCUUGCGa--GCG----AAGuGCCG- -5'
15661 5' -55.6 NC_004065.1 + 52823 0.66 0.96923
Target:  5'- uGCUCu-GGAgaugcagaugauGCGCUCGgCgggggcgCACGGCg -3'
miRNA:   3'- gCGAGcuCCU------------UGCGAGC-Gaa-----GUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 195418 0.66 0.963072
Target:  5'- aCGCUcCGAGaucCGCgUGCUgCGCGGCg -3'
miRNA:   3'- -GCGA-GCUCcuuGCGaGCGAaGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.