miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15661 5' -55.6 NC_004065.1 + 121963 0.69 0.888871
Target:  5'- cCGCUCGGGGGuugggauACGacgUCGUUuuuccUCGCGGUg -3'
miRNA:   3'- -GCGAGCUCCU-------UGCg--AGCGA-----AGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 152281 0.7 0.830724
Target:  5'- aGgUCGAGGA--GCUCGCccagUCcuGCGGCg -3'
miRNA:   3'- gCgAGCUCCUugCGAGCGa---AG--UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 109896 0.7 0.838731
Target:  5'- cCGCgUCGGGGggUcccgGCUCGUccgcCGCGGCc -3'
miRNA:   3'- -GCG-AGCUCCuuG----CGAGCGaa--GUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 66107 0.7 0.853455
Target:  5'- gCGCUgGGGGGcgacaucaccgagGCGCUgGCgcgCugGGCc -3'
miRNA:   3'- -GCGAgCUCCU-------------UGCGAgCGaa-GugCCG- -5'
15661 5' -55.6 NC_004065.1 + 45608 0.7 0.854211
Target:  5'- gCGCgggacgaGGGGAACGgUCGagaCACGGCg -3'
miRNA:   3'- -GCGag-----CUCCUUGCgAGCgaaGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 228187 0.7 0.861672
Target:  5'- aCGCUCGcugaucGGAcggACGUUCGUguaguaCACGGCg -3'
miRNA:   3'- -GCGAGCu-----CCU---UGCGAGCGaa----GUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 32777 0.69 0.868939
Target:  5'- uGCUCGAGGAacauGCGCUCGag----GGCc -3'
miRNA:   3'- gCGAGCUCCU----UGCGAGCgaagugCCG- -5'
15661 5' -55.6 NC_004065.1 + 43033 0.69 0.876007
Target:  5'- uCGCUCGAuGGAAacCGCgUCGgCUUCucgaGGCg -3'
miRNA:   3'- -GCGAGCU-CCUU--GCG-AGC-GAAGug--CCG- -5'
15661 5' -55.6 NC_004065.1 + 225137 0.69 0.882872
Target:  5'- gGCUCGGGacgcGGACGCUC-CUcCugGGUg -3'
miRNA:   3'- gCGAGCUC----CUUGCGAGcGAaGugCCG- -5'
15661 5' -55.6 NC_004065.1 + 26939 0.71 0.797076
Target:  5'- gGCUCaAGGAcCGCUCcgGCggcCGCGGCg -3'
miRNA:   3'- gCGAGcUCCUuGCGAG--CGaa-GUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 35212 0.71 0.788296
Target:  5'- -uCUCgGAGGAcCGCUCGCUacaGCGGUa -3'
miRNA:   3'- gcGAG-CUCCUuGCGAGCGAag-UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 185855 0.72 0.7612
Target:  5'- gGCgUGAGGGACGCgacUGC-UCACGGUu -3'
miRNA:   3'- gCGaGCUCCUUGCGa--GCGaAGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 229353 0.76 0.517489
Target:  5'- uCGCUCGAccagcgaGcGggUGCUCGCUacgCGCGGCc -3'
miRNA:   3'- -GCGAGCU-------C-CuuGCGAGCGAa--GUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 59915 0.75 0.605843
Target:  5'- uGCUCGAGaaaGACGUugUCGCggCGCGGCc -3'
miRNA:   3'- gCGAGCUCc--UUGCG--AGCGaaGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 50428 0.74 0.635527
Target:  5'- uCGCUCGAGGcGCGgUCGCacacgCGUGGCg -3'
miRNA:   3'- -GCGAGCUCCuUGCgAGCGaa---GUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 66524 0.74 0.645426
Target:  5'- uCGCUgugCGuGGAGCGCcugCGCUUCaaccgcGCGGCg -3'
miRNA:   3'- -GCGA---GCuCCUUGCGa--GCGAAG------UGCCG- -5'
15661 5' -55.6 NC_004065.1 + 229258 0.73 0.675033
Target:  5'- aCGCUCGAaggucGAGCGCgaaccCGCgaCGCGGCa -3'
miRNA:   3'- -GCGAGCUc----CUUGCGa----GCGaaGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 117395 0.72 0.733141
Target:  5'- aCGCUCGGcc-GCGCgCGCUgggcUCGCGGCg -3'
miRNA:   3'- -GCGAGCUccuUGCGaGCGA----AGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 138519 0.72 0.733141
Target:  5'- gCGUUCGAcGGGcuguugGCGCUCGaa-CGCGGCa -3'
miRNA:   3'- -GCGAGCU-CCU------UGCGAGCgaaGUGCCG- -5'
15661 5' -55.6 NC_004065.1 + 68289 0.72 0.751943
Target:  5'- uGUUCGAGGAGgGCUCGgcgacggaCUUCgagACGGUg -3'
miRNA:   3'- gCGAGCUCCUUgCGAGC--------GAAG---UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.