miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 2062 0.68 0.983634
Target:  5'- aCGGGaACC---GCGAUCGCCGcCGCg -3'
miRNA:   3'- gGCCUgUGGuugUGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 2090 1.11 0.008183
Target:  5'- uCCGGACACCAACACGAUCACCGUCACc -3'
miRNA:   3'- -GGCCUGUGGUUGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 8246 0.66 0.993909
Target:  5'- cCCGGcC-CCGACaacgcagACGAU-ACCGUCGCc -3'
miRNA:   3'- -GGCCuGuGGUUG-------UGCUAgUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 8616 0.66 0.994785
Target:  5'- gCCGuaguGAUacaacacaGCUAACGCGAUCAgaGUCACu -3'
miRNA:   3'- -GGC----CUG--------UGGUUGUGCUAGUggCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 9288 0.72 0.901723
Target:  5'- gUCGcacACGCCGAcCGCGAUCGCCGugUCGCu -3'
miRNA:   3'- -GGCc--UGUGGUU-GUGCUAGUGGC--AGUG- -5'
15662 3' -52.9 NC_004065.1 + 11775 0.68 0.977395
Target:  5'- uCCGu-CACCAccugACGuCGuuuAUCACCGUCACa -3'
miRNA:   3'- -GGCcuGUGGU----UGU-GC---UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 13456 0.66 0.99549
Target:  5'- gCGGAgAUaugGCAUGAUC-CCGUUACc -3'
miRNA:   3'- gGCCUgUGgu-UGUGCUAGuGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 17663 0.71 0.919353
Target:  5'- gUCGGAUGaCGACcgACGGUCGuCCGUCGCg -3'
miRNA:   3'- -GGCCUGUgGUUG--UGCUAGU-GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 18292 0.66 0.993107
Target:  5'- -aGGACgaaaGCCGACACGA--GCCGgacUCGCc -3'
miRNA:   3'- ggCCUG----UGGUUGUGCUagUGGC---AGUG- -5'
15662 3' -52.9 NC_004065.1 + 19025 0.71 0.928432
Target:  5'- cUCGGACGCCAAgACGAacgucucguuuucgUCguccccgcuACUGUCACu -3'
miRNA:   3'- -GGCCUGUGGUUgUGCU--------------AG---------UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 21028 0.71 0.919353
Target:  5'- uUCGGAgcuguaCGCUAGgGCGAUCGCCaUCACc -3'
miRNA:   3'- -GGCCU------GUGGUUgUGCUAGUGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 21996 0.66 0.994785
Target:  5'- aCGGccACGCCG--ACGGUCAUCGcCGCc -3'
miRNA:   3'- gGCC--UGUGGUugUGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 22236 0.66 0.99549
Target:  5'- -gGcGugGCCGugGCGGcccUCACCGUCc- -3'
miRNA:   3'- ggC-CugUGGUugUGCU---AGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 22266 0.72 0.888848
Target:  5'- gCCGGGuuagUGCCGGCgGCGAUgACCGUCGg -3'
miRNA:   3'- -GGCCU----GUGGUUG-UGCUAgUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 22485 0.83 0.371525
Target:  5'- uUGGGCGCCGGCACGAUgACgGUCAUc -3'
miRNA:   3'- gGCCUGUGGUUGUGCUAgUGgCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 22867 0.67 0.991023
Target:  5'- aUCGGAUACCuguCAUGAaaaccccuUUACCGggCACg -3'
miRNA:   3'- -GGCCUGUGGuu-GUGCU--------AGUGGCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 24474 0.72 0.901723
Target:  5'- cUCGGACAUgGGCGCGuagauggCACCGcCGCc -3'
miRNA:   3'- -GGCCUGUGgUUGUGCua-----GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 27389 0.66 0.99212
Target:  5'- cUCGGAC-CCGGCucguCGuuGUCAUCGUCGu -3'
miRNA:   3'- -GGCCUGuGGUUGu---GC--UAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 29996 0.66 0.993107
Target:  5'- gUGGuauCGCCAgaggcuGCGCGAccgUCACCGgCGCg -3'
miRNA:   3'- gGCCu--GUGGU------UGUGCU---AGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 30753 0.68 0.977395
Target:  5'- cCCGGAaucauCCAACGCcGUCGCC-UCAUc -3'
miRNA:   3'- -GGCCUgu---GGUUGUGcUAGUGGcAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.