miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 229783 0.66 0.99549
Target:  5'- gCCGGACgaagGCCAACuCGuuaACCGagCACa -3'
miRNA:   3'- -GGCCUG----UGGUUGuGCuagUGGCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 229546 0.71 0.924774
Target:  5'- gCCGGugACgCAACGCGAcCAgCGUgcCGCg -3'
miRNA:   3'- -GGCCugUG-GUUGUGCUaGUgGCA--GUG- -5'
15662 3' -52.9 NC_004065.1 + 229272 0.67 0.987003
Target:  5'- gCgGGAgGCCGaguGCGCGAUCucgcuCCG-CGCg -3'
miRNA:   3'- -GgCCUgUGGU---UGUGCUAGu----GGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 228766 0.66 0.99549
Target:  5'- cCUGGACcucaugACgGACGCGGgaacCGCCGgagCACa -3'
miRNA:   3'- -GGCCUG------UGgUUGUGCUa---GUGGCa--GUG- -5'
15662 3' -52.9 NC_004065.1 + 228729 0.68 0.980494
Target:  5'- cCCGcGACGCCGgacucgcgaugagcaACGCGGUC-CCGUUc- -3'
miRNA:   3'- -GGC-CUGUGGU---------------UGUGCUAGuGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 225374 0.66 0.99212
Target:  5'- uCUGGACGCCcGCGgCGGgggCGCUGgCGCu -3'
miRNA:   3'- -GGCCUGUGGuUGU-GCUa--GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 224884 0.67 0.988473
Target:  5'- uCCGGACGCguACACGucCACgGUguCg -3'
miRNA:   3'- -GGCCUGUGguUGUGCuaGUGgCAguG- -5'
15662 3' -52.9 NC_004065.1 + 224798 0.76 0.710409
Target:  5'- gCGGGCGgCAGCACGGUCacgaccGCCGUCu- -3'
miRNA:   3'- gGCCUGUgGUUGUGCUAG------UGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 224642 0.68 0.983634
Target:  5'- aCGGugACGCCGACG-GAaCGCCGcCACa -3'
miRNA:   3'- gGCC--UGUGGUUGUgCUaGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 223496 0.69 0.963363
Target:  5'- cUCGGG-ACCAGCA-GAUCGCCGgUCAg -3'
miRNA:   3'- -GGCCUgUGGUUGUgCUAGUGGC-AGUg -5'
15662 3' -52.9 NC_004065.1 + 222198 0.67 0.988473
Target:  5'- aUGGuuGCgCGACACGAccccauUCACCGgCACg -3'
miRNA:   3'- gGCCugUG-GUUGUGCU------AGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 216848 0.67 0.988332
Target:  5'- aCGGACGCCGcugUACGGuuucUCACCGguuugacggucguUCGCg -3'
miRNA:   3'- gGCCUGUGGUu--GUGCU----AGUGGC-------------AGUG- -5'
15662 3' -52.9 NC_004065.1 + 213195 0.66 0.993993
Target:  5'- aCCGc-CACCuccgacgaggguGACACGAUCACCacccUCACg -3'
miRNA:   3'- -GGCcuGUGG------------UUGUGCUAGUGGc---AGUG- -5'
15662 3' -52.9 NC_004065.1 + 211811 0.92 0.112052
Target:  5'- aCGGugACCAuCGCGAUCACCGUCGCc -3'
miRNA:   3'- gGCCugUGGUuGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 211760 0.68 0.977395
Target:  5'- gUCGGACuCCugguGCACGGg-AUCGUCACc -3'
miRNA:   3'- -GGCCUGuGGu---UGUGCUagUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 211491 0.68 0.983634
Target:  5'- gCCaGGCGCCcgGugACGAUC-CCGUgCACc -3'
miRNA:   3'- -GGcCUGUGG--UugUGCUAGuGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 211449 0.67 0.987003
Target:  5'- gCCGuGuCACCGcucCACGuuUCACCGUCGg -3'
miRNA:   3'- -GGC-CuGUGGUu--GUGCu-AGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 209187 0.68 0.977395
Target:  5'- aCUGGACACCGAC-CGuUCuuUgGUCGCu -3'
miRNA:   3'- -GGCCUGUGGUUGuGCuAGu-GgCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 208327 0.68 0.98172
Target:  5'- gUCGGAUACaga-GgGAUCGCgGUCGCg -3'
miRNA:   3'- -GGCCUGUGguugUgCUAGUGgCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 207894 0.67 0.987607
Target:  5'- gCCGGcCGCguGCGgcauggagcugucccUGGUCACCGUCGu -3'
miRNA:   3'- -GGCCuGUGguUGU---------------GCUAGUGGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.