miRNA display CGI


Results 1 - 20 of 268 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 2090 1.11 0.008183
Target:  5'- uCCGGACACCAACACGAUCACCGUCACc -3'
miRNA:   3'- -GGCCUGUGGUUGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 60951 0.73 0.837195
Target:  5'- aCGGGCG-CAGCGCcAUCACCGUCuCg -3'
miRNA:   3'- gGCCUGUgGUUGUGcUAGUGGCAGuG- -5'
15662 3' -52.9 NC_004065.1 + 150299 0.72 0.867919
Target:  5'- gUGGACGCCAAgACGucCAUCGUCAa -3'
miRNA:   3'- gGCCUGUGGUUgUGCuaGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 41983 0.66 0.99549
Target:  5'- aUCGGccCGCCGAUcaggAUGAUCACCGUg-- -3'
miRNA:   3'- -GGCCu-GUGGUUG----UGCUAGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 72011 0.79 0.525917
Target:  5'- --cGACGCCAACACGGUCACCGaccgguagcgccgcgUCACc -3'
miRNA:   3'- ggcCUGUGGUUGUGCUAGUGGC---------------AGUG- -5'
15662 3' -52.9 NC_004065.1 + 151416 0.79 0.530749
Target:  5'- gCCGGcGCGCCAGCucGCGGUCGCCGacgaucaUCGCg -3'
miRNA:   3'- -GGCC-UGUGGUUG--UGCUAGUGGC-------AGUG- -5'
15662 3' -52.9 NC_004065.1 + 53941 0.76 0.700595
Target:  5'- gUCGGGCGgCGACACGAUCAUCGg--- -3'
miRNA:   3'- -GGCCUGUgGUUGUGCUAGUGGCagug -5'
15662 3' -52.9 NC_004065.1 + 124720 0.76 0.710409
Target:  5'- cCCGGcGCAgCGGCACGGcgCGCCGUCGg -3'
miRNA:   3'- -GGCC-UGUgGUUGUGCUa-GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 146010 0.74 0.794827
Target:  5'- aCCGG-CGCgCGACGCGAUCGgCG-CACu -3'
miRNA:   3'- -GGCCuGUG-GUUGUGCUAGUgGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 103314 0.73 0.837195
Target:  5'- gCCGGGCAUC-ACGCcGUUcaaACCGUCACu -3'
miRNA:   3'- -GGCCUGUGGuUGUGcUAG---UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 32799 0.74 0.812253
Target:  5'- gCGGAUACCGccgGCGCGAcgggGCCGUCAUc -3'
miRNA:   3'- gGCCUGUGGU---UGUGCUag--UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 146833 0.74 0.785898
Target:  5'- gCCGGGCuCCGGCACGAgcggCACC-UUACc -3'
miRNA:   3'- -GGCCUGuGGUUGUGCUa---GUGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 211811 0.92 0.112052
Target:  5'- aCGGugACCAuCGCGAUCACCGUCGCc -3'
miRNA:   3'- gGCCugUGGUuGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 49963 0.74 0.820734
Target:  5'- gCCGGGCAUCAugGagagGAcCGCCGUCAUc -3'
miRNA:   3'- -GGCCUGUGGUugUg---CUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 138391 0.87 0.221843
Target:  5'- gCCGGcCgcuguagccaugcucACCGACGCGAUCGCCGUCGCg -3'
miRNA:   3'- -GGCCuG---------------UGGUUGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 198043 0.75 0.75835
Target:  5'- gCUGGugACCAACGCGGaCACCGgCGa -3'
miRNA:   3'- -GGCCugUGGUUGUGCUaGUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 188870 0.73 0.82905
Target:  5'- gCCGc-CGgCGACACGGUCGCCGUgACg -3'
miRNA:   3'- -GGCcuGUgGUUGUGCUAGUGGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 67245 0.73 0.852941
Target:  5'- aCGGGCGCCGACugG-UCACgGcuugCGCg -3'
miRNA:   3'- gGCCUGUGGUUGugCuAGUGgCa---GUG- -5'
15662 3' -52.9 NC_004065.1 + 22485 0.83 0.371525
Target:  5'- uUGGGCGCCGGCACGAUgACgGUCAUc -3'
miRNA:   3'- gGCCUGUGGUUGUGCUAgUGgCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 135642 0.77 0.660869
Target:  5'- gUCGGGCgcgGCCGGCGCG-UCACCGUCc- -3'
miRNA:   3'- -GGCCUG---UGGUUGUGCuAGUGGCAGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.