miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 5' -58.7 NC_004065.1 + 211802 0.66 0.900363
Target:  5'- aUCGCGAucaccgUCGCCGCauucguCGCGUuauucguggucgUCGGACUc -3'
miRNA:   3'- -GGCGCU------AGCGGCG------GCGCA------------AGUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 192695 0.66 0.900363
Target:  5'- gCCuCGAUCguuauGCUGCCGUGUaccaUCAgcGACCGg -3'
miRNA:   3'- -GGcGCUAG-----CGGCGGCGCA----AGU--CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 125858 0.66 0.894267
Target:  5'- gCGCGcAUCGacCCGCCGCGcaCGG-CCa -3'
miRNA:   3'- gGCGC-UAGC--GGCGGCGCaaGUCuGGc -5'
15662 5' -58.7 NC_004065.1 + 91159 0.66 0.894267
Target:  5'- aCGCGGUCuGCUccgaGCuCGCGUUCAG-CUa -3'
miRNA:   3'- gGCGCUAG-CGG----CG-GCGCAAGUCuGGc -5'
15662 5' -58.7 NC_004065.1 + 201739 0.66 0.894267
Target:  5'- aCCGCGG--GCCGUCGgG-UC-GACCGg -3'
miRNA:   3'- -GGCGCUagCGGCGGCgCaAGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 113611 0.66 0.894267
Target:  5'- cCCGCGGUC-CCGCCaaGgggcuggaagCGGACCc -3'
miRNA:   3'- -GGCGCUAGcGGCGGcgCaa--------GUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 66083 0.66 0.894267
Target:  5'- gCGCGGaucucCGCCGgcaUCGCGUUCAcGAUCGc -3'
miRNA:   3'- gGCGCUa----GCGGC---GGCGCAAGU-CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 197221 0.66 0.894267
Target:  5'- aUGCGggCGCCGCCuugugucugggaGCGU--GGACCc -3'
miRNA:   3'- gGCGCuaGCGGCGG------------CGCAagUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 123895 0.66 0.894267
Target:  5'- gCCGUGcacGUCGUCGCCcCGUacccCAGGCCc -3'
miRNA:   3'- -GGCGC---UAGCGGCGGcGCAa---GUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 30588 0.66 0.894267
Target:  5'- gCCGCGGcgagCGCCucguCCGCGUUCcgAGGCa- -3'
miRNA:   3'- -GGCGCUa---GCGGc---GGCGCAAG--UCUGgc -5'
15662 5' -58.7 NC_004065.1 + 63713 0.66 0.894267
Target:  5'- gCCGUGAUCGCC-UgGUGgUCGGcGCCGu -3'
miRNA:   3'- -GGCGCUAGCGGcGgCGCaAGUC-UGGC- -5'
15662 5' -58.7 NC_004065.1 + 99550 0.66 0.894267
Target:  5'- cCCGUc-UCGCCGCgGCGgaCGG-CCGu -3'
miRNA:   3'- -GGCGcuAGCGGCGgCGCaaGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 145300 0.66 0.894267
Target:  5'- aCGgGGUaaCGUCGCCGC-UUCGGguGCCGa -3'
miRNA:   3'- gGCgCUA--GCGGCGGCGcAAGUC--UGGC- -5'
15662 5' -58.7 NC_004065.1 + 142637 0.66 0.893646
Target:  5'- uCCGCGAUCGCgcaGgUGCucagggaGUUCGuGGCCGa -3'
miRNA:   3'- -GGCGCUAGCGg--CgGCG-------CAAGU-CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 74665 0.67 0.887969
Target:  5'- aCCGCGGcgCGuCCGCCGUaGcgCAGGguCCGa -3'
miRNA:   3'- -GGCGCUa-GC-GGCGGCG-CaaGUCU--GGC- -5'
15662 5' -58.7 NC_004065.1 + 53564 0.67 0.887969
Target:  5'- uCCGUGGU-GCUGCUGUGUg-GGGCCu -3'
miRNA:   3'- -GGCGCUAgCGGCGGCGCAagUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 30841 0.67 0.881472
Target:  5'- aCGCGGacgaggcgcUCGCCGCgGCGgaacggGGGCUGg -3'
miRNA:   3'- gGCGCU---------AGCGGCGgCGCaag---UCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 194468 0.67 0.881472
Target:  5'- aCgGCGG-CGCCGCCGC--UCAcGCCu -3'
miRNA:   3'- -GgCGCUaGCGGCGGCGcaAGUcUGGc -5'
15662 5' -58.7 NC_004065.1 + 68741 0.67 0.881472
Target:  5'- aCGgGGUCGCUGCCGgacUCGGACa- -3'
miRNA:   3'- gGCgCUAGCGGCGGCgcaAGUCUGgc -5'
15662 5' -58.7 NC_004065.1 + 41028 0.67 0.881472
Target:  5'- uCCGUGAguccgUCGaaGCCGCagagcUCGGGCCGc -3'
miRNA:   3'- -GGCGCU-----AGCggCGGCGca---AGUCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.