miRNA display CGI


Results 21 - 40 of 210 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 5' -58.7 NC_004065.1 + 32978 0.74 0.518947
Target:  5'- gCGCGA-CGCCGCCaaGUUCAugGACCu -3'
miRNA:   3'- gGCGCUaGCGGCGGcgCAAGU--CUGGc -5'
15662 5' -58.7 NC_004065.1 + 34693 0.66 0.922687
Target:  5'- aCGCGggCGCCGCCcaggaGCacgaAGACCu -3'
miRNA:   3'- gGCGCuaGCGGCGG-----CGcaagUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 36868 0.68 0.806581
Target:  5'- aCGCGcAUCGCCGCCcagcagcagGCGUcCuGACgCGg -3'
miRNA:   3'- gGCGC-UAGCGGCGG---------CGCAaGuCUG-GC- -5'
15662 5' -58.7 NC_004065.1 + 39981 0.69 0.781117
Target:  5'- uCgGCGAUCcgGUCGCgGCGUUCGGAgauaCGg -3'
miRNA:   3'- -GgCGCUAG--CGGCGgCGCAAGUCUg---GC- -5'
15662 5' -58.7 NC_004065.1 + 41028 0.67 0.881472
Target:  5'- uCCGUGAguccgUCGaaGCCGCagagcUCGGGCCGc -3'
miRNA:   3'- -GGCGCU-----AGCggCGGCGca---AGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 42095 0.66 0.900363
Target:  5'- gCGCG-UCGCCggcGCCGaCGUaCGuGACCGu -3'
miRNA:   3'- gGCGCuAGCGG---CGGC-GCAaGU-CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 42679 0.71 0.680253
Target:  5'- aCGCGAa-GCUGCuCGCGUUCGGAgCu -3'
miRNA:   3'- gGCGCUagCGGCG-GCGCAAGUCUgGc -5'
15662 5' -58.7 NC_004065.1 + 43046 0.66 0.917955
Target:  5'- aCCGCGucggcuucucgaggCGUCGgCGCGa-CAGACCGc -3'
miRNA:   3'- -GGCGCua------------GCGGCgGCGCaaGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 43105 0.71 0.680253
Target:  5'- uCCGCGAcccggCGCCGauCCGCGcUCgcgaAGACCGc -3'
miRNA:   3'- -GGCGCUa----GCGGC--GGCGCaAG----UCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 43359 0.68 0.838557
Target:  5'- gCGCgGAUCGgCGCCGgGUcgcggaugccCGGACCGu -3'
miRNA:   3'- gGCG-CUAGCgGCGGCgCAa---------GUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 43796 0.67 0.860831
Target:  5'- uUCGCGAUcagaguagCGUCuCUGCGcgCGGACCGg -3'
miRNA:   3'- -GGCGCUA--------GCGGcGGCGCaaGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 45364 0.7 0.736429
Target:  5'- gUCGCcuUCGCCGCCGCuggaGGACCc -3'
miRNA:   3'- -GGCGcuAGCGGCGGCGcaagUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 45788 0.71 0.664995
Target:  5'- gCCGC---CGCCGCCGCGgcgccggguggcgUAGACCGu -3'
miRNA:   3'- -GGCGcuaGCGGCGGCGCaa-----------GUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 45799 0.69 0.775891
Target:  5'- aUCGgGGgcuggCGCCacacGCCGCGUgcgggugggcauguaUCGGACCGg -3'
miRNA:   3'- -GGCgCUa----GCGG----CGGCGCA---------------AGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 48352 0.67 0.867899
Target:  5'- gCCGCcacCGCCGCCGCca-CAGGuCCGc -3'
miRNA:   3'- -GGCGcuaGCGGCGGCGcaaGUCU-GGC- -5'
15662 5' -58.7 NC_004065.1 + 50547 0.71 0.689746
Target:  5'- cUCGCGAUCGCCGCgcggacgGCGgucUCGGGgcCCGa -3'
miRNA:   3'- -GGCGCUAGCGGCGg------CGCa--AGUCU--GGC- -5'
15662 5' -58.7 NC_004065.1 + 50995 0.69 0.781117
Target:  5'- aCGCGAccacacggaGCCGCCGUGcaUAGACCu -3'
miRNA:   3'- gGCGCUag-------CGGCGGCGCaaGUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 53564 0.67 0.887969
Target:  5'- uCCGUGGU-GCUGCUGUGUg-GGGCCu -3'
miRNA:   3'- -GGCGCUAgCGGCGGCGCAagUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 56036 0.74 0.491703
Target:  5'- gCCGCGAUCGCCuGCUcgGCGccgAGACCGc -3'
miRNA:   3'- -GGCGCUAGCGG-CGG--CGCaagUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 56371 0.68 0.838557
Target:  5'- -gGCGAgCGCCGCCGuCGUcCGGGaCGg -3'
miRNA:   3'- ggCGCUaGCGGCGGC-GCAaGUCUgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.