miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 5' -58.7 NC_004065.1 + 2056 1.11 0.002351
Target:  5'- aCCGCGAUCGCCGCCGCGUUCAGACCGg -3'
miRNA:   3'- -GGCGCUAGCGGCGGCGCAAGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 7182 0.66 0.917419
Target:  5'- aUCGCGAUCGUCauGCuCGUcugcuucucGUUCGGugCGu -3'
miRNA:   3'- -GGCGCUAGCGG--CG-GCG---------CAAGUCugGC- -5'
15662 5' -58.7 NC_004065.1 + 13196 0.69 0.789733
Target:  5'- aCCGaaagaauaGAUCGUCGCgGCGaacagCAGACCc -3'
miRNA:   3'- -GGCg-------CUAGCGGCGgCGCaa---GUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 17674 0.69 0.772385
Target:  5'- aCCGaCGGUCGuCCGUCGCGccaUCGccguGGCCGu -3'
miRNA:   3'- -GGC-GCUAGC-GGCGGCGCa--AGU----CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 17843 0.68 0.830795
Target:  5'- uCUGgGAUUGCCGCCGaGUcgagCAG-CCGa -3'
miRNA:   3'- -GGCgCUAGCGGCGGCgCAa---GUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 18324 0.74 0.518947
Target:  5'- gCgGCGGUCGCUGCCGCcaucGUcgagaUCAGACuCGa -3'
miRNA:   3'- -GgCGCUAGCGGCGGCG----CA-----AGUCUG-GC- -5'
15662 5' -58.7 NC_004065.1 + 19954 0.66 0.911941
Target:  5'- gCCGCa--CGCCuCCGCGuUUCAG-CCGu -3'
miRNA:   3'- -GGCGcuaGCGGcGGCGC-AAGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 20632 0.71 0.680253
Target:  5'- uCCGCGAccguaUCGCCGUCucCGUcgCAGGCCu -3'
miRNA:   3'- -GGCGCU-----AGCGGCGGc-GCAa-GUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 20982 0.78 0.316944
Target:  5'- gCCGUGAUCGCCGUCGuCGccgUCGGuGCCGu -3'
miRNA:   3'- -GGCGCUAGCGGCGGC-GCa--AGUC-UGGC- -5'
15662 5' -58.7 NC_004065.1 + 22324 0.71 0.66117
Target:  5'- gCGCGGguuggGCCGCCGCGacC-GACCGg -3'
miRNA:   3'- gGCGCUag---CGGCGGCGCaaGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 24780 0.71 0.680253
Target:  5'- gCCGUcGUCGCUGCCGCcgccaucUUgGGGCCGg -3'
miRNA:   3'- -GGCGcUAGCGGCGGCGc------AAgUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 25104 0.66 0.917419
Target:  5'- gCCGCcGUCGCCGCCaacaUCGGgcGCCGc -3'
miRNA:   3'- -GGCGcUAGCGGCGGcgcaAGUC--UGGC- -5'
15662 5' -58.7 NC_004065.1 + 26300 0.68 0.806581
Target:  5'- cUCGCGGuUCGaCGCCGCGUgCGaGCCGc -3'
miRNA:   3'- -GGCGCU-AGCgGCGGCGCAaGUcUGGC- -5'
15662 5' -58.7 NC_004065.1 + 27413 0.69 0.788877
Target:  5'- -gGCGuuUUGCCGCgGCGUguguugcUCGGACCc -3'
miRNA:   3'- ggCGCu-AGCGGCGgCGCA-------AGUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 27925 0.7 0.736429
Target:  5'- aCGCGAgCGCCGCCGacagaGacgCAGugCGc -3'
miRNA:   3'- gGCGCUaGCGGCGGCg----Caa-GUCugGC- -5'
15662 5' -58.7 NC_004065.1 + 30224 0.68 0.838557
Target:  5'- gCCGC---CGCCGCCGCcgcCAGcACCGg -3'
miRNA:   3'- -GGCGcuaGCGGCGGCGcaaGUC-UGGC- -5'
15662 5' -58.7 NC_004065.1 + 30588 0.66 0.894267
Target:  5'- gCCGCGGcgagCGCCucguCCGCGUUCcgAGGCa- -3'
miRNA:   3'- -GGCGCUa---GCGGc---GGCGCAAG--UCUGgc -5'
15662 5' -58.7 NC_004065.1 + 30841 0.67 0.881472
Target:  5'- aCGCGGacgaggcgcUCGCCGCgGCGgaacggGGGCUGg -3'
miRNA:   3'- gGCGCU---------AGCGGCGgCGCaag---UCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 30981 0.66 0.900363
Target:  5'- gUGgGAUgCGCuCGCCGCGU-CGGGCg- -3'
miRNA:   3'- gGCgCUA-GCG-GCGGCGCAaGUCUGgc -5'
15662 5' -58.7 NC_004065.1 + 32248 0.67 0.860831
Target:  5'- gUCGCGGUCGCCGgCG-GUUCcaaggGGAUgGa -3'
miRNA:   3'- -GGCGCUAGCGGCgGCgCAAG-----UCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.