miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 5' -58.7 NC_004065.1 + 63844 0.71 0.670725
Target:  5'- gCUGCuGAcguUCGCCaugGCCGCGUUCggaaGGACCa -3'
miRNA:   3'- -GGCG-CU---AGCGG---CGGCGCAAG----UCUGGc -5'
15662 5' -58.7 NC_004065.1 + 96854 0.73 0.584551
Target:  5'- gCGCGcuGUCGCCGCgggCGcCGUUCuGGCCGu -3'
miRNA:   3'- gGCGC--UAGCGGCG---GC-GCAAGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 66624 0.72 0.613222
Target:  5'- gCCGCGGgcugCGgCGCUGCGUggCGGACgCGc -3'
miRNA:   3'- -GGCGCUa---GCgGCGGCGCAa-GUCUG-GC- -5'
15662 5' -58.7 NC_004065.1 + 99954 0.72 0.613222
Target:  5'- gCCGUaGUCGaccaCCGCCGCGgcgugcUCGGGCCGc -3'
miRNA:   3'- -GGCGcUAGC----GGCGGCGCa-----AGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 226125 0.72 0.622812
Target:  5'- -gGCGGggGUCGCCGCGUggAGGCUGg -3'
miRNA:   3'- ggCGCUagCGGCGGCGCAagUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 61538 0.72 0.622812
Target:  5'- -gGCGAUCGCaGUCGCGguagaAGGCCGa -3'
miRNA:   3'- ggCGCUAGCGgCGGCGCaag--UCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 208338 0.72 0.642005
Target:  5'- -aGgGAUCGCgGUCGCGUaUCuGACCGc -3'
miRNA:   3'- ggCgCUAGCGgCGGCGCA-AGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 198923 0.72 0.642005
Target:  5'- aUCGCG--CGCCGCCggGCGUUCuGAUCGc -3'
miRNA:   3'- -GGCGCuaGCGGCGG--CGCAAGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 172064 0.71 0.669771
Target:  5'- gUCGCGGUCcuccgugGCCGCCGCgGUUC-GAgCGg -3'
miRNA:   3'- -GGCGCUAG-------CGGCGGCG-CAAGuCUgGC- -5'
15662 5' -58.7 NC_004065.1 + 126180 0.73 0.565578
Target:  5'- gCGCGAUCGCCGUCacgGCGUUCu--CCu -3'
miRNA:   3'- gGCGCUAGCGGCGG---CGCAAGucuGGc -5'
15662 5' -58.7 NC_004065.1 + 198450 0.73 0.546768
Target:  5'- aCCGaCG-UCGCCGCgucCGCGUUCGGGUCGg -3'
miRNA:   3'- -GGC-GCuAGCGGCG---GCGCAAGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 170461 0.74 0.518947
Target:  5'- gCGCcuUCGCUGCCGCcg-CAGACCGc -3'
miRNA:   3'- gGCGcuAGCGGCGGCGcaaGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 143114 0.77 0.367168
Target:  5'- aCGCGcgCGCCGCCGaGggCgAGACCGg -3'
miRNA:   3'- gGCGCuaGCGGCGGCgCaaG-UCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 128782 0.77 0.382489
Target:  5'- gCGCcGUCGCCGgCggcaccucugGCGUUCAGACCGa -3'
miRNA:   3'- gGCGcUAGCGGCgG----------CGCAAGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 97692 0.76 0.414378
Target:  5'- cUCGCGGUCGCUGCCGCcgccgccCGGGCUGu -3'
miRNA:   3'- -GGCGCUAGCGGCGGCGcaa----GUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 125133 0.76 0.422602
Target:  5'- aCCGCGccGUCGCCcaGCCGCGUggcgaUCAG-CCGc -3'
miRNA:   3'- -GGCGC--UAGCGG--CGGCGCA-----AGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 194826 0.75 0.44785
Target:  5'- -gGCGGUgGCCGCCaCGUUCuccAGGCCGa -3'
miRNA:   3'- ggCGCUAgCGGCGGcGCAAG---UCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 195433 0.74 0.491703
Target:  5'- gCCGCG-UCGCCGUCGuCGgaCAGGuCCGa -3'
miRNA:   3'- -GGCGCuAGCGGCGGC-GCaaGUCU-GGC- -5'
15662 5' -58.7 NC_004065.1 + 110702 0.74 0.491703
Target:  5'- aCGUGAgcCGCCGCCGCGacUCGG-CCGa -3'
miRNA:   3'- gGCGCUa-GCGGCGGCGCa-AGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 164846 0.74 0.509797
Target:  5'- aCCGCGAUgGCCGCCGCuaugUUAGAg-- -3'
miRNA:   3'- -GGCGCUAgCGGCGGCGca--AGUCUggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.