miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 5' -58.7 NC_004065.1 + 2056 1.11 0.002351
Target:  5'- aCCGCGAUCGCCGCCGCGUUCAGACCGg -3'
miRNA:   3'- -GGCGCUAGCGGCGGCGCAAGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 61778 0.81 0.215515
Target:  5'- aCUGCGAUCGCCugcgggaugcugucGCCGCGUUCuucaAGACCu -3'
miRNA:   3'- -GGCGCUAGCGG--------------CGGCGCAAG----UCUGGc -5'
15662 5' -58.7 NC_004065.1 + 138365 0.79 0.278158
Target:  5'- aCGCGAUCGCCGUCGCGgUCcGACg- -3'
miRNA:   3'- gGCGCUAGCGGCGGCGCaAGuCUGgc -5'
15662 5' -58.7 NC_004065.1 + 128698 0.78 0.303578
Target:  5'- cCCGCGGaCGCCuccGCCGCGcUCAGACuCGg -3'
miRNA:   3'- -GGCGCUaGCGG---CGGCGCaAGUCUG-GC- -5'
15662 5' -58.7 NC_004065.1 + 20982 0.78 0.316944
Target:  5'- gCCGUGAUCGCCGUCGuCGccgUCGGuGCCGu -3'
miRNA:   3'- -GGCGCUAGCGGCGGC-GCa--AGUC-UGGC- -5'
15662 5' -58.7 NC_004065.1 + 163432 0.77 0.344991
Target:  5'- gCCGCGGUgGCCGCCGCcGUgCAGucgGCCa -3'
miRNA:   3'- -GGCGCUAgCGGCGGCG-CAaGUC---UGGc -5'
15662 5' -58.7 NC_004065.1 + 83538 0.77 0.359668
Target:  5'- -aGCGGUCgGCCGCCGCG---AGGCCGg -3'
miRNA:   3'- ggCGCUAG-CGGCGGCGCaagUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 143114 0.77 0.367168
Target:  5'- aCGCGcgCGCCGCCGaGggCgAGACCGg -3'
miRNA:   3'- gGCGCuaGCGGCGGCgCaaG-UCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 127397 0.77 0.382489
Target:  5'- -gGCGAUCGCCGCCGCcggUAGcGCCGc -3'
miRNA:   3'- ggCGCUAGCGGCGGCGcaaGUC-UGGC- -5'
15662 5' -58.7 NC_004065.1 + 128782 0.77 0.382489
Target:  5'- gCGCcGUCGCCGgCggcaccucugGCGUUCAGACCGa -3'
miRNA:   3'- gGCGcUAGCGGCgG----------CGCAAGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 142591 0.76 0.406253
Target:  5'- gUGCucUCGCCGCCgGCGUUCgAGACCu -3'
miRNA:   3'- gGCGcuAGCGGCGG-CGCAAG-UCUGGc -5'
15662 5' -58.7 NC_004065.1 + 97692 0.76 0.414378
Target:  5'- cUCGCGGUCGCUGCCGCcgccgccCGGGCUGu -3'
miRNA:   3'- -GGCGCUAGCGGCGGCGcaa----GUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 68414 0.76 0.422602
Target:  5'- gUCGCGcgCGCCGCCGCGaUC--ACCGc -3'
miRNA:   3'- -GGCGCuaGCGGCGGCGCaAGucUGGC- -5'
15662 5' -58.7 NC_004065.1 + 125133 0.76 0.422602
Target:  5'- aCCGCGccGUCGCCcaGCCGCGUggcgaUCAG-CCGc -3'
miRNA:   3'- -GGCGC--UAGCGG--CGGCGCA-----AGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 194826 0.75 0.44785
Target:  5'- -gGCGGUgGCCGCCaCGUUCuccAGGCCGa -3'
miRNA:   3'- ggCGCUAgCGGCGGcGCAAG---UCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 198430 0.74 0.482768
Target:  5'- aCGUGAUCGUgGCCGacaaGUUCGgGGCCGu -3'
miRNA:   3'- gGCGCUAGCGgCGGCg---CAAGU-CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 195433 0.74 0.491703
Target:  5'- gCCGCG-UCGCCGUCGuCGgaCAGGuCCGa -3'
miRNA:   3'- -GGCGCuAGCGGCGGC-GCaaGUCU-GGC- -5'
15662 5' -58.7 NC_004065.1 + 110702 0.74 0.491703
Target:  5'- aCGUGAgcCGCCGCCGCGacUCGG-CCGa -3'
miRNA:   3'- gGCGCUa-GCGGCGGCGCa-AGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 56036 0.74 0.491703
Target:  5'- gCCGCGAUCGCCuGCUcgGCGccgAGACCGc -3'
miRNA:   3'- -GGCGCUAGCGG-CGG--CGCaagUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 164846 0.74 0.509797
Target:  5'- aCCGCGAUgGCCGCCGCuaugUUAGAg-- -3'
miRNA:   3'- -GGCGCUAgCGGCGGCGca--AGUCUggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.