miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 5' -58.7 NC_004065.1 + 195486 0.66 0.900363
Target:  5'- gUCGCucUCGCUGUCGCGggagcccgcgUCAGAgCGc -3'
miRNA:   3'- -GGCGcuAGCGGCGGCGCa---------AGUCUgGC- -5'
15662 5' -58.7 NC_004065.1 + 165892 0.66 0.911941
Target:  5'- gCCGCacgCGCUGCCGuCGUgguaCGGAUCu -3'
miRNA:   3'- -GGCGcuaGCGGCGGC-GCAa---GUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 57762 0.66 0.911941
Target:  5'- aUCGUcGUCGCCGCCGcCGUcgcucucgguggUCAG-UCGg -3'
miRNA:   3'- -GGCGcUAGCGGCGGC-GCA------------AGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 76677 0.66 0.906255
Target:  5'- aUCGCGucggCGCCGCCguccccgaagaaGCGUUCgaAGAgCGc -3'
miRNA:   3'- -GGCGCua--GCGGCGG------------CGCAAG--UCUgGC- -5'
15662 5' -58.7 NC_004065.1 + 126504 0.66 0.911941
Target:  5'- cCCGCG-UCGCCaugcGCCGCGcgaUCGucCCGu -3'
miRNA:   3'- -GGCGCuAGCGG----CGGCGCa--AGUcuGGC- -5'
15662 5' -58.7 NC_004065.1 + 113611 0.66 0.894267
Target:  5'- cCCGCGGUC-CCGCCaaGgggcuggaagCGGACCc -3'
miRNA:   3'- -GGCGCUAGcGGCGGcgCaa--------GUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 141102 0.66 0.911941
Target:  5'- gCCGCGccuucagcggcAUCGCCGaCGCGcUCAGGuuCCu -3'
miRNA:   3'- -GGCGC-----------UAGCGGCgGCGCaAGUCU--GGc -5'
15662 5' -58.7 NC_004065.1 + 30981 0.66 0.900363
Target:  5'- gUGgGAUgCGCuCGCCGCGU-CGGGCg- -3'
miRNA:   3'- gGCgCUA-GCG-GCGGCGCAaGUCUGgc -5'
15662 5' -58.7 NC_004065.1 + 123895 0.66 0.894267
Target:  5'- gCCGUGcacGUCGUCGCCcCGUacccCAGGCCc -3'
miRNA:   3'- -GGCGC---UAGCGGCGGcGCAa---GUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 42095 0.66 0.900363
Target:  5'- gCGCG-UCGCCggcGCCGaCGUaCGuGACCGu -3'
miRNA:   3'- gGCGCuAGCGG---CGGC-GCAaGU-CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 145300 0.66 0.894267
Target:  5'- aCGgGGUaaCGUCGCCGC-UUCGGguGCCGa -3'
miRNA:   3'- gGCgCUA--GCGGCGGCGcAAGUC--UGGC- -5'
15662 5' -58.7 NC_004065.1 + 30588 0.66 0.894267
Target:  5'- gCCGCGGcgagCGCCucguCCGCGUUCcgAGGCa- -3'
miRNA:   3'- -GGCGCUa---GCGGc---GGCGCAAG--UCUGgc -5'
15662 5' -58.7 NC_004065.1 + 63713 0.66 0.894267
Target:  5'- gCCGUGAUCGCC-UgGUGgUCGGcGCCGu -3'
miRNA:   3'- -GGCGCUAGCGGcGgCGCaAGUC-UGGC- -5'
15662 5' -58.7 NC_004065.1 + 138229 0.66 0.906255
Target:  5'- uCUGCGAugucgaggcgcUCGCCGCCGuCGaggagggUCGGGuguCCGa -3'
miRNA:   3'- -GGCGCU-----------AGCGGCGGC-GCa------AGUCU---GGC- -5'
15662 5' -58.7 NC_004065.1 + 169570 0.66 0.911941
Target:  5'- gCGCGcuGUUGCCGCuguCGCGgcUCcGGCCGg -3'
miRNA:   3'- gGCGC--UAGCGGCG---GCGCa-AGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 199514 0.66 0.911941
Target:  5'- aCGCGGcgGCCGCCacguGCGcgCAG-CCGg -3'
miRNA:   3'- gGCGCUagCGGCGG----CGCaaGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 145243 0.66 0.922687
Target:  5'- aCGCGAUccaccaucugaCGCCGCaGCuGUUCcuGGACCc -3'
miRNA:   3'- gGCGCUA-----------GCGGCGgCG-CAAG--UCUGGc -5'
15662 5' -58.7 NC_004065.1 + 192695 0.66 0.900363
Target:  5'- gCCuCGAUCguuauGCUGCCGUGUaccaUCAgcGACCGg -3'
miRNA:   3'- -GGcGCUAG-----CGGCGGCGCA----AGU--CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 142637 0.66 0.893646
Target:  5'- uCCGCGAUCGCgcaGgUGCucagggaGUUCGuGGCCGa -3'
miRNA:   3'- -GGCGCUAGCGg--CgGCG-------CAAGU-CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 119448 0.66 0.906255
Target:  5'- -gGUGGUCGCCGagaccgaCGCcuggCGGACCGc -3'
miRNA:   3'- ggCGCUAGCGGCg------GCGcaa-GUCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.