miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15663 3' -57.8 NC_004065.1 + 139960 0.66 0.918717
Target:  5'- -gUCCCucauCUCGGCAaGCGCGUccGCGa -3'
miRNA:   3'- gaAGGGugc-GAGCCGUaUGCGCG--CGU- -5'
15663 3' -57.8 NC_004065.1 + 169822 0.66 0.918717
Target:  5'- ---gCCGCGacagCGGCAacaGCGCGCAg -3'
miRNA:   3'- gaagGGUGCga--GCCGUaugCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 67464 0.66 0.918717
Target:  5'- --gCCgAgGCggCGGUGUACGUGUGCGa -3'
miRNA:   3'- gaaGGgUgCGa-GCCGUAUGCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 27714 0.66 0.918717
Target:  5'- --aCCCGaGCUCGcGCGUgAUGCGCGgAg -3'
miRNA:   3'- gaaGGGUgCGAGC-CGUA-UGCGCGCgU- -5'
15663 3' -57.8 NC_004065.1 + 201198 0.66 0.913135
Target:  5'- -gUCCCG-GCUCgGGCGgcgcggcgACGUGCGUg -3'
miRNA:   3'- gaAGGGUgCGAG-CCGUa-------UGCGCGCGu -5'
15663 3' -57.8 NC_004065.1 + 146838 0.66 0.913135
Target:  5'- uUUCCCuucgUGCUCaGCGacguCGCGCGCc -3'
miRNA:   3'- gAAGGGu---GCGAGcCGUau--GCGCGCGu -5'
15663 3' -57.8 NC_004065.1 + 115036 0.66 0.912565
Target:  5'- --aUCCGCGCggCcgccagggccgagGGCAacgGCGCGCGCGa -3'
miRNA:   3'- gaaGGGUGCGa-G-------------CCGUa--UGCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 88423 0.66 0.907332
Target:  5'- uUUCCCGuccgcCGCUcgucCGGCGaGCGgGCGCc -3'
miRNA:   3'- gAAGGGU-----GCGA----GCCGUaUGCgCGCGu -5'
15663 3' -57.8 NC_004065.1 + 125888 0.66 0.907332
Target:  5'- ---gCCACGCggCGGCucGUGCacuucuaccagGCGCGCAu -3'
miRNA:   3'- gaagGGUGCGa-GCCG--UAUG-----------CGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 31289 0.66 0.907332
Target:  5'- -cUCCUgGCGCUCGGCAggGC-CGCGg- -3'
miRNA:   3'- gaAGGG-UGCGAGCCGUa-UGcGCGCgu -5'
15663 3' -57.8 NC_004065.1 + 109436 0.66 0.907332
Target:  5'- ---gCCGCGCU-GGCG-GCGCGUGUAu -3'
miRNA:   3'- gaagGGUGCGAgCCGUaUGCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 91187 0.66 0.907332
Target:  5'- --gCCgcggaaGCGCcgUCGGCGUGCGCG-GCAu -3'
miRNA:   3'- gaaGGg-----UGCG--AGCCGUAUGCGCgCGU- -5'
15663 3' -57.8 NC_004065.1 + 101534 0.66 0.901311
Target:  5'- --gUCUAUGC-CGGCGcagauaACGCGCGCGg -3'
miRNA:   3'- gaaGGGUGCGaGCCGUa-----UGCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 150398 0.66 0.901311
Target:  5'- --aCgCACGCccgCaGCGUccGCGCGCGCAg -3'
miRNA:   3'- gaaGgGUGCGa--GcCGUA--UGCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 77809 0.66 0.895074
Target:  5'- --aCCCGCGCgaacgagcccUCGGU---CGCGCGCc -3'
miRNA:   3'- gaaGGGUGCG----------AGCCGuauGCGCGCGu -5'
15663 3' -57.8 NC_004065.1 + 134261 0.66 0.888623
Target:  5'- aCUUCCCAcuacCGCccCcGCGUGCGUGgGCAc -3'
miRNA:   3'- -GAAGGGU----GCGa-GcCGUAUGCGCgCGU- -5'
15663 3' -57.8 NC_004065.1 + 30605 0.67 0.881962
Target:  5'- --gUCCGCGUUCcgaGGCAgcgACGCGUGUc -3'
miRNA:   3'- gaaGGGUGCGAG---CCGUa--UGCGCGCGu -5'
15663 3' -57.8 NC_004065.1 + 166144 0.67 0.881962
Target:  5'- ---aCCACGa-CGGCA-GCGCGUGCGg -3'
miRNA:   3'- gaagGGUGCgaGCCGUaUGCGCGCGU- -5'
15663 3' -57.8 NC_004065.1 + 125789 0.67 0.881962
Target:  5'- -gUCUUgaGCGcCUCGGCGUGCGagauGCGCu -3'
miRNA:   3'- gaAGGG--UGC-GAGCCGUAUGCg---CGCGu -5'
15663 3' -57.8 NC_004065.1 + 54721 0.67 0.875095
Target:  5'- gCUgcgCgUGCGCUcgCGGCAgacCGCGCGCGa -3'
miRNA:   3'- -GAa--GgGUGCGA--GCCGUau-GCGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.