miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 3' -59.5 NC_004065.1 + 201292 0.66 0.855784
Target:  5'- uCAGUCUccGGCggcGGUGGCgaggcgccgcgcgcaCGCGGCCu- -3'
miRNA:   3'- -GUCAGA--UCGa--UCGCCGa--------------GCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 143371 0.66 0.855037
Target:  5'- cCGGUCUcGCccucGGCGGCgCGCGcGUCGa -3'
miRNA:   3'- -GUCAGAuCGa---UCGCCGaGCGC-CGGCa -5'
15664 3' -59.5 NC_004065.1 + 68137 0.66 0.855037
Target:  5'- gGGUCUgucggacgAGCUGgacGCGGUgaUCGCGGCgGc -3'
miRNA:   3'- gUCAGA--------UCGAU---CGCCG--AGCGCCGgCa -5'
15664 3' -59.5 NC_004065.1 + 31294 0.66 0.847473
Target:  5'- aCAGacucCUGGCgcucGGCagGGC-CGCGGCCGa -3'
miRNA:   3'- -GUCa---GAUCGa---UCG--CCGaGCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 31376 0.66 0.847473
Target:  5'- gAGUCUgaucGGCcGGCGGaucCUCuCGGCCGg -3'
miRNA:   3'- gUCAGA----UCGaUCGCC---GAGcGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 22263 0.66 0.838159
Target:  5'- gGGUUaguGCcGGCGGCgaugaccgucggCGUGGCCGUg -3'
miRNA:   3'- gUCAGau-CGaUCGCCGa-----------GCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 69470 0.66 0.831811
Target:  5'- -uGUCgcgccGGCU-GCGGUaCGCGGCCa- -3'
miRNA:   3'- guCAGa----UCGAuCGCCGaGCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 68768 0.66 0.823727
Target:  5'- gCGG-CgguGCUGGCGGCcuUCaaGGCCGUg -3'
miRNA:   3'- -GUCaGau-CGAUCGCCG--AGcgCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 91961 0.66 0.823727
Target:  5'- gCGGg--AGCUcGCGGacaUCGUGGCCGc -3'
miRNA:   3'- -GUCagaUCGAuCGCCg--AGCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 149969 0.66 0.823727
Target:  5'- gAGUCcgagGGCcggcGCGGC-CGCGGCCc- -3'
miRNA:   3'- gUCAGa---UCGau--CGCCGaGCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 184902 0.66 0.815482
Target:  5'- uCGGgagCgGGCgcccgGGUGGCUCgggaGCGGCCGg -3'
miRNA:   3'- -GUCa--GaUCGa----UCGCCGAG----CGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 192118 0.66 0.815482
Target:  5'- uGGUaucggGGCgccaucGCGGCgauagUCGCGGCCGUc -3'
miRNA:   3'- gUCAga---UCGau----CGCCG-----AGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 120619 0.66 0.815482
Target:  5'- -cGagUAGCUcGUGGCguccgcCGCGGCCGa -3'
miRNA:   3'- guCagAUCGAuCGCCGa-----GCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 169576 0.66 0.815482
Target:  5'- -uGUUgccGCUGucGCGGCUC-CGGCCGg -3'
miRNA:   3'- guCAGau-CGAU--CGCCGAGcGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 147739 0.66 0.815482
Target:  5'- -cGUCcaggGGCUGGaCGGCcaccaUGCGGCCGc -3'
miRNA:   3'- guCAGa---UCGAUC-GCCGa----GCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 62324 0.67 0.807083
Target:  5'- gCAGUCgaGGCUguagAGgGGCUCG-GGCUGg -3'
miRNA:   3'- -GUCAGa-UCGA----UCgCCGAGCgCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 136346 0.67 0.807083
Target:  5'- uCAGUUcGGCUgcAGUGGCaUGCGGCgCGa -3'
miRNA:   3'- -GUCAGaUCGA--UCGCCGaGCGCCG-GCa -5'
15664 3' -59.5 NC_004065.1 + 223217 0.67 0.807083
Target:  5'- gAGUCgucGGCggUAGCGGCgaCGCGGUCu- -3'
miRNA:   3'- gUCAGa--UCG--AUCGCCGa-GCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 149689 0.67 0.798539
Target:  5'- gGGUCUGcaggugaacGCcgGGgGGC-CGCGGCCGc -3'
miRNA:   3'- gUCAGAU---------CGa-UCgCCGaGCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 6684 0.67 0.798539
Target:  5'- aGGUacgUGGCUGGUGGaCggGUGGCCGUu -3'
miRNA:   3'- gUCAg--AUCGAUCGCC-GagCGCCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.