miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 3' -59.5 NC_004065.1 + 6472 1.07 0.002715
Target:  5'- gCAGUCUAGCUAGCGGCUCGCGGCCGUa -3'
miRNA:   3'- -GUCAGAUCGAUCGCCGAGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 116136 0.75 0.359151
Target:  5'- uGGUC-GGCguccugcGGCGGCUCGgGGCCGg -3'
miRNA:   3'- gUCAGaUCGa------UCGCCGAGCgCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 96760 0.73 0.43208
Target:  5'- gCAGggCgacGGCggaGGCGGCaUCGCGGCCGUc -3'
miRNA:   3'- -GUCa-Ga--UCGa--UCGCCG-AGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 114389 0.71 0.579862
Target:  5'- -cGUCUAauaCUcuGCGGCUCGgGGCCGUc -3'
miRNA:   3'- guCAGAUc--GAu-CGCCGAGCgCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 93601 0.71 0.560491
Target:  5'- gGGUCUGGCcGGCGGCg---GGCCGg -3'
miRNA:   3'- gUCAGAUCGaUCGCCGagcgCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 55777 0.71 0.579862
Target:  5'- gCGGUCUcGGCgccgAGCaGGCgaUCGCGGCUGa -3'
miRNA:   3'- -GUCAGA-UCGa---UCG-CCG--AGCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 125849 0.7 0.628785
Target:  5'- aCGGUCgugGGC-AGCuGGUUCuCGGCCGUg -3'
miRNA:   3'- -GUCAGa--UCGaUCG-CCGAGcGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 24271 0.7 0.609162
Target:  5'- uCGGUg-AGCUcaCGGCUCGCGGCCc- -3'
miRNA:   3'- -GUCAgaUCGAucGCCGAGCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 6253 0.7 0.599371
Target:  5'- -----cGGCaAGCaGCUCGCGGCCGUc -3'
miRNA:   3'- gucagaUCGaUCGcCGAGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 66160 0.69 0.685537
Target:  5'- cCAG-CUGGCcgAGCGGUUCGCGGaacacugcgcgaCGUg -3'
miRNA:   3'- -GUCaGAUCGa-UCGCCGAGCGCCg-----------GCA- -5'
15664 3' -59.5 NC_004065.1 + 126280 0.69 0.687478
Target:  5'- aGGUg-GGCgAGCGGCUCGUGGCg-- -3'
miRNA:   3'- gUCAgaUCGaUCGCCGAGCGCCGgca -5'
15664 3' -59.5 NC_004065.1 + 194740 0.69 0.684566
Target:  5'- uCGGUCUucuucaagagaggaGGCgugAGCGGCggCGCcGCCGUg -3'
miRNA:   3'- -GUCAGA--------------UCGa--UCGCCGa-GCGcCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 24741 0.69 0.687478
Target:  5'- gAGUCUGGCgcacucguugGGCGGCccccCGuUGGCCGg -3'
miRNA:   3'- gUCAGAUCGa---------UCGCCGa---GC-GCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 8295 0.68 0.706786
Target:  5'- uGGUCUGGUagucgGGCGGaC-CGUGGUCGUg -3'
miRNA:   3'- gUCAGAUCGa----UCGCC-GaGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 196817 0.68 0.735292
Target:  5'- --uUCUGGCacGC-GUUCGCGGCCGUg -3'
miRNA:   3'- gucAGAUCGauCGcCGAGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 90814 0.68 0.74464
Target:  5'- gGGUCUGGCguucuugacgAGCGGCcauUCGagaaaguuggaGGCCGUg -3'
miRNA:   3'- gUCAGAUCGa---------UCGCCG---AGCg----------CCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 128144 0.68 0.735292
Target:  5'- aGGUCauGCUGGCGuuacGCUCGCcgGGCCGc -3'
miRNA:   3'- gUCAGauCGAUCGC----CGAGCG--CCGGCa -5'
15664 3' -59.5 NC_004065.1 + 116073 0.68 0.725861
Target:  5'- uGGUCcucGGgUAGCuGCUCGuCGGCCGa -3'
miRNA:   3'- gUCAGa--UCgAUCGcCGAGC-GCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 59969 0.68 0.716357
Target:  5'- -----aGGUUGGCGGCuUCGuCGGCCGa -3'
miRNA:   3'- gucagaUCGAUCGCCG-AGC-GCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 6384 0.68 0.735292
Target:  5'- gAGUaggAGCUGGCGGCg-GCGGCg-- -3'
miRNA:   3'- gUCAga-UCGAUCGCCGagCGCCGgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.