miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 3' -59.5 NC_004065.1 + 223217 0.67 0.807083
Target:  5'- gAGUCgucGGCggUAGCGGCgaCGCGGUCu- -3'
miRNA:   3'- gUCAGa--UCG--AUCGCCGa-GCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 201292 0.66 0.855784
Target:  5'- uCAGUCUccGGCggcGGUGGCgaggcgccgcgcgcaCGCGGCCu- -3'
miRNA:   3'- -GUCAGA--UCGa--UCGCCGa--------------GCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 196817 0.68 0.735292
Target:  5'- --uUCUGGCacGC-GUUCGCGGCCGUg -3'
miRNA:   3'- gucAGAUCGauCGcCGAGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 194740 0.69 0.684566
Target:  5'- uCGGUCUucuucaagagaggaGGCgugAGCGGCggCGCcGCCGUg -3'
miRNA:   3'- -GUCAGA--------------UCGa--UCGCCGa-GCGcCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 192118 0.66 0.815482
Target:  5'- uGGUaucggGGCgccaucGCGGCgauagUCGCGGCCGUc -3'
miRNA:   3'- gUCAga---UCGau----CGCCG-----AGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 184902 0.66 0.815482
Target:  5'- uCGGgagCgGGCgcccgGGUGGCUCgggaGCGGCCGg -3'
miRNA:   3'- -GUCa--GaUCGa----UCGCCGAG----CGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 169576 0.66 0.815482
Target:  5'- -uGUUgccGCUGucGCGGCUC-CGGCCGg -3'
miRNA:   3'- guCAGau-CGAU--CGCCGAGcGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 152337 0.67 0.772106
Target:  5'- aGGUgCUGGCUGuagauGCGGa-CGCGGUCGUg -3'
miRNA:   3'- gUCA-GAUCGAU-----CGCCgaGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 149969 0.66 0.823727
Target:  5'- gAGUCcgagGGCcggcGCGGC-CGCGGCCc- -3'
miRNA:   3'- gUCAGa---UCGau--CGCCGaGCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 149689 0.67 0.798539
Target:  5'- gGGUCUGcaggugaacGCcgGGgGGC-CGCGGCCGc -3'
miRNA:   3'- gUCAGAU---------CGa-UCgCCGaGCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 147739 0.66 0.815482
Target:  5'- -cGUCcaggGGCUGGaCGGCcaccaUGCGGCCGc -3'
miRNA:   3'- guCAGa---UCGAUC-GCCGa----GCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 143371 0.66 0.855037
Target:  5'- cCGGUCUcGCccucGGCGGCgCGCGcGUCGa -3'
miRNA:   3'- -GUCAGAuCGa---UCGCCGaGCGC-CGGCa -5'
15664 3' -59.5 NC_004065.1 + 136346 0.67 0.807083
Target:  5'- uCAGUUcGGCUgcAGUGGCaUGCGGCgCGa -3'
miRNA:   3'- -GUCAGaUCGA--UCGCCGaGCGCCG-GCa -5'
15664 3' -59.5 NC_004065.1 + 128144 0.68 0.735292
Target:  5'- aGGUCauGCUGGCGuuacGCUCGCcgGGCCGc -3'
miRNA:   3'- gUCAGauCGAUCGC----CGAGCG--CCGGCa -5'
15664 3' -59.5 NC_004065.1 + 126280 0.69 0.687478
Target:  5'- aGGUg-GGCgAGCGGCUCGUGGCg-- -3'
miRNA:   3'- gUCAgaUCGaUCGCCGAGCGCCGgca -5'
15664 3' -59.5 NC_004065.1 + 125849 0.7 0.628785
Target:  5'- aCGGUCgugGGC-AGCuGGUUCuCGGCCGUg -3'
miRNA:   3'- -GUCAGa--UCGaUCG-CCGAGcGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 120619 0.66 0.815482
Target:  5'- -cGagUAGCUcGUGGCguccgcCGCGGCCGa -3'
miRNA:   3'- guCagAUCGAuCGCCGa-----GCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 116136 0.75 0.359151
Target:  5'- uGGUC-GGCguccugcGGCGGCUCGgGGCCGg -3'
miRNA:   3'- gUCAGaUCGa------UCGCCGAGCgCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 116073 0.68 0.725861
Target:  5'- uGGUCcucGGgUAGCuGCUCGuCGGCCGa -3'
miRNA:   3'- gUCAGa--UCgAUCGcCGAGC-GCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 114389 0.71 0.579862
Target:  5'- -cGUCUAauaCUcuGCGGCUCGgGGCCGUc -3'
miRNA:   3'- guCAGAUc--GAu-CGCCGAGCgCCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.