miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 3' -59.5 NC_004065.1 + 223217 0.67 0.807083
Target:  5'- gAGUCgucGGCggUAGCGGCgaCGCGGUCu- -3'
miRNA:   3'- gUCAGa--UCG--AUCGCCGa-GCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 1800 0.67 0.763055
Target:  5'- cCGGUCUGaacGC-GGCGGCgaUCGCGGuucCCGUg -3'
miRNA:   3'- -GUCAGAU---CGaUCGCCG--AGCGCC---GGCA- -5'
15664 3' -59.5 NC_004065.1 + 18190 0.67 0.763055
Target:  5'- --aUCUgAGCUGGaCGGCUCGCGaCUGUc -3'
miRNA:   3'- gucAGA-UCGAUC-GCCGAGCGCcGGCA- -5'
15664 3' -59.5 NC_004065.1 + 50734 0.67 0.772106
Target:  5'- aGGUCUAuGCacGGCGGCUCcguGUGGUCGc -3'
miRNA:   3'- gUCAGAU-CGa-UCGCCGAG---CGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 101127 0.67 0.772106
Target:  5'- gCGGUCU-GCUuGCGGaacCGCGaGCCGUu -3'
miRNA:   3'- -GUCAGAuCGAuCGCCga-GCGC-CGGCA- -5'
15664 3' -59.5 NC_004065.1 + 29969 0.67 0.789856
Target:  5'- cCGGUgCUGGCggcGGCGGCg-GCGGCaGUg -3'
miRNA:   3'- -GUCA-GAUCGa--UCGCCGagCGCCGgCA- -5'
15664 3' -59.5 NC_004065.1 + 149689 0.67 0.798539
Target:  5'- gGGUCUGcaggugaacGCcgGGgGGC-CGCGGCCGc -3'
miRNA:   3'- gUCAGAU---------CGa-UCgCCGaGCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 6684 0.67 0.798539
Target:  5'- aGGUacgUGGCUGGUGGaCggGUGGCCGUu -3'
miRNA:   3'- gUCAg--AUCGAUCGCC-GagCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 62324 0.67 0.807083
Target:  5'- gCAGUCgaGGCUguagAGgGGCUCG-GGCUGg -3'
miRNA:   3'- -GUCAGa-UCGA----UCgCCGAGCgCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 90814 0.68 0.74464
Target:  5'- gGGUCUGGCguucuugacgAGCGGCcauUCGagaaaguuggaGGCCGUg -3'
miRNA:   3'- gUCAGAUCGa---------UCGCCG---AGCg----------CCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 128144 0.68 0.735292
Target:  5'- aGGUCauGCUGGCGuuacGCUCGCcgGGCCGc -3'
miRNA:   3'- gUCAGauCGAUCGC----CGAGCG--CCGGCa -5'
15664 3' -59.5 NC_004065.1 + 116073 0.68 0.725861
Target:  5'- uGGUCcucGGgUAGCuGCUCGuCGGCCGa -3'
miRNA:   3'- gUCAGa--UCgAUCGcCGAGC-GCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 96760 0.73 0.43208
Target:  5'- gCAGggCgacGGCggaGGCGGCaUCGCGGCCGUc -3'
miRNA:   3'- -GUCa-Ga--UCGa--UCGCCG-AGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 55777 0.71 0.579862
Target:  5'- gCGGUCUcGGCgccgAGCaGGCgaUCGCGGCUGa -3'
miRNA:   3'- -GUCAGA-UCGa---UCG-CCG--AGCGCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 6253 0.7 0.599371
Target:  5'- -----cGGCaAGCaGCUCGCGGCCGUc -3'
miRNA:   3'- gucagaUCGaUCGcCGAGCGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 24271 0.7 0.609162
Target:  5'- uCGGUg-AGCUcaCGGCUCGCGGCCc- -3'
miRNA:   3'- -GUCAgaUCGAucGCCGAGCGCCGGca -5'
15664 3' -59.5 NC_004065.1 + 125849 0.7 0.628785
Target:  5'- aCGGUCgugGGC-AGCuGGUUCuCGGCCGUg -3'
miRNA:   3'- -GUCAGa--UCGaUCG-CCGAGcGCCGGCA- -5'
15664 3' -59.5 NC_004065.1 + 66160 0.69 0.685537
Target:  5'- cCAG-CUGGCcgAGCGGUUCGCGGaacacugcgcgaCGUg -3'
miRNA:   3'- -GUCaGAUCGa-UCGCCGAGCGCCg-----------GCA- -5'
15664 3' -59.5 NC_004065.1 + 24741 0.69 0.687478
Target:  5'- gAGUCUGGCgcacucguugGGCGGCccccCGuUGGCCGg -3'
miRNA:   3'- gUCAGAUCGa---------UCGCCGa---GC-GCCGGCa -5'
15664 3' -59.5 NC_004065.1 + 59969 0.68 0.716357
Target:  5'- -----aGGUUGGCGGCuUCGuCGGCCGa -3'
miRNA:   3'- gucagaUCGAUCGCCG-AGC-GCCGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.