miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 5' -53.5 NC_004065.1 + 1446 0.71 0.848401
Target:  5'- -cGCGUAGCAguaguaccCCGGCAGCGGcGCCGa- -3'
miRNA:   3'- guUGUAUCGU--------GGCUGUCGCU-CGGUcu -5'
15664 5' -53.5 NC_004065.1 + 1551 0.71 0.878545
Target:  5'- gCGACGUGGUguguaaGCUGACGGCGuGCCugcGAg -3'
miRNA:   3'- -GUUGUAUCG------UGGCUGUCGCuCGGu--CU- -5'
15664 5' -53.5 NC_004065.1 + 6436 1.1 0.006328
Target:  5'- aCAACAUAGCACCGACAGCGAGCCAGAg -3'
miRNA:   3'- -GUUGUAUCGUGGCUGUCGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 16858 0.72 0.832131
Target:  5'- -cGCAc-GCACggCGAgGGCGAGCCAGAa -3'
miRNA:   3'- guUGUauCGUG--GCUgUCGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 18280 0.75 0.658166
Target:  5'- ---aGUAGCGCCGAUAGgacgaaagccgacaCGAGCCGGAc -3'
miRNA:   3'- guugUAUCGUGGCUGUC--------------GCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 19853 0.66 0.981568
Target:  5'- gGACGaAGCuGCCGaAUGGCGuGCUAGAg -3'
miRNA:   3'- gUUGUaUCG-UGGC-UGUCGCuCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 20323 0.66 0.979437
Target:  5'- aGACGgcAGUGCCG-CGGCaGAGCCGGu -3'
miRNA:   3'- gUUGUa-UCGUGGCuGUCG-CUCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 20719 0.7 0.88347
Target:  5'- aCGAC--GGCACCGACGGCGAcgacggcgaucacgGCgAGGg -3'
miRNA:   3'- -GUUGuaUCGUGGCUGUCGCU--------------CGgUCU- -5'
15664 5' -53.5 NC_004065.1 + 21417 0.67 0.971949
Target:  5'- gAACAUGGCGgUGaaguagacggcGCAGCGAuacauuccgGCCAGAu -3'
miRNA:   3'- gUUGUAUCGUgGC-----------UGUCGCU---------CGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 22265 0.67 0.977129
Target:  5'- cCGGguUAGUGCCGGCGGCGAugaccGUCGGc -3'
miRNA:   3'- -GUUguAUCGUGGCUGUCGCU-----CGGUCu -5'
15664 5' -53.5 NC_004065.1 + 24524 0.66 0.979437
Target:  5'- cCAAgAUGGCGgCGGCAGCGAcgacgGCagCGGAg -3'
miRNA:   3'- -GUUgUAUCGUgGCUGUCGCU-----CG--GUCU- -5'
15664 5' -53.5 NC_004065.1 + 24750 0.67 0.965973
Target:  5'- cCGGCGcucAGgGCCGGCGGCGGuGCCAu- -3'
miRNA:   3'- -GUUGUa--UCgUGGCUGUCGCU-CGGUcu -5'
15664 5' -53.5 NC_004065.1 + 29978 0.69 0.922749
Target:  5'- gCGGCGgcGGCGgCGGCAGUGGuaucGCCAGAg -3'
miRNA:   3'- -GUUGUa-UCGUgGCUGUCGCU----CGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 31146 0.71 0.84036
Target:  5'- cCGACucgGGCAUCGACAccgccGCG-GCCGGAg -3'
miRNA:   3'- -GUUGua-UCGUGGCUGU-----CGCuCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 34110 0.67 0.977129
Target:  5'- gCGAUAaAGCGCCGGCAGaaCGAGuCCGc- -3'
miRNA:   3'- -GUUGUaUCGUGGCUGUC--GCUC-GGUcu -5'
15664 5' -53.5 NC_004065.1 + 42109 0.68 0.955026
Target:  5'- cCGACGUacgugaccguuuuGGCGCaCGACGGgGAcacGCCGGAc -3'
miRNA:   3'- -GUUGUA-------------UCGUG-GCUGUCgCU---CGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 42832 0.69 0.938162
Target:  5'- aAGCAUgcGGCGCCGACugaagAGCuuGCCAGu -3'
miRNA:   3'- gUUGUA--UCGUGGCUG-----UCGcuCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 43153 0.66 0.981568
Target:  5'- aGACAcgcGCACgGACGGCGGGaacggCAGAc -3'
miRNA:   3'- gUUGUau-CGUGgCUGUCGCUCg----GUCU- -5'
15664 5' -53.5 NC_004065.1 + 43224 0.71 0.848401
Target:  5'- -uGCGUAGCACCG-CuGCGcuuuuAGCCGGGc -3'
miRNA:   3'- guUGUAUCGUGGCuGuCGC-----UCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 44837 0.69 0.928125
Target:  5'- gCGACAcGGaCAgCGACA-CGGGCCGGAg -3'
miRNA:   3'- -GUUGUaUC-GUgGCUGUcGCUCGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.