miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 5' -53.5 NC_004065.1 + 227980 0.67 0.965973
Target:  5'- -cACGUcgAGgACCGAgAGCcAGCCGGAg -3'
miRNA:   3'- guUGUA--UCgUGGCUgUCGcUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 226721 0.68 0.955413
Target:  5'- gCAGC--GGCGCUGGCagaaGGCGAGCCcGGu -3'
miRNA:   3'- -GUUGuaUCGUGGCUG----UCGCUCGGuCU- -5'
15664 5' -53.5 NC_004065.1 + 225902 0.7 0.911285
Target:  5'- gCGAC--GGCGgCGGCGG-GAGCCGGAg -3'
miRNA:   3'- -GUUGuaUCGUgGCUGUCgCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 224284 0.66 0.981568
Target:  5'- gCAGCGcUAGCgcguuGCCGAuCAGCacgauccccaGGGCCAGGa -3'
miRNA:   3'- -GUUGU-AUCG-----UGGCU-GUCG----------CUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 223083 0.68 0.962671
Target:  5'- uCGACGcAGCuuCCGACGGCGGacGCCgAGGc -3'
miRNA:   3'- -GUUGUaUCGu-GGCUGUCGCU--CGG-UCU- -5'
15664 5' -53.5 NC_004065.1 + 222954 0.66 0.986973
Target:  5'- gAGCcgGUGGUACCGgacGCGGCGgAGCCGu- -3'
miRNA:   3'- gUUG--UAUCGUGGC---UGUCGC-UCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 222905 0.7 0.905198
Target:  5'- gGACGUggGGCGCUGAC-GCGGGCCc-- -3'
miRNA:   3'- gUUGUA--UCGUGGCUGuCGCUCGGucu -5'
15664 5' -53.5 NC_004065.1 + 213577 0.7 0.905198
Target:  5'- gAACGUGGUACCGGgcucgcUAGUGGGCuCGGGc -3'
miRNA:   3'- gUUGUAUCGUGGCU------GUCGCUCG-GUCU- -5'
15664 5' -53.5 NC_004065.1 + 211464 0.66 0.986973
Target:  5'- gAAUAUcGCAgccguUCGGCcauGCGAGCCAGGc -3'
miRNA:   3'- gUUGUAuCGU-----GGCUGu--CGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 202584 0.68 0.955413
Target:  5'- uCGACcaGGCGCCGACAacucGCGGG-CGGAc -3'
miRNA:   3'- -GUUGuaUCGUGGCUGU----CGCUCgGUCU- -5'
15664 5' -53.5 NC_004065.1 + 201630 0.69 0.917136
Target:  5'- uCGACGUGGCACCcccCGGCGAGgCgCAGc -3'
miRNA:   3'- -GUUGUAUCGUGGcu-GUCGCUC-G-GUCu -5'
15664 5' -53.5 NC_004065.1 + 201532 0.68 0.962671
Target:  5'- gCGACGgAGCuCCG-CGGCGcugucGGCCAGAc -3'
miRNA:   3'- -GUUGUaUCGuGGCuGUCGC-----UCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 201275 0.67 0.976888
Target:  5'- uGGCGaGGCGCCGcgcgcacGCGGCcucGAGUCAGAc -3'
miRNA:   3'- gUUGUaUCGUGGC-------UGUCG---CUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 201017 0.68 0.955413
Target:  5'- gCGACGagagAGCgACCGACGcGUGAGCCGc- -3'
miRNA:   3'- -GUUGUa---UCG-UGGCUGU-CGCUCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 198367 0.71 0.871324
Target:  5'- uGACGcGGCgcgucGCCGACAGCGuGCCGa- -3'
miRNA:   3'- gUUGUaUCG-----UGGCUGUCGCuCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 197249 0.7 0.905198
Target:  5'- gAGCggGUGGCguGCCGAUAGgGuGCCGGAu -3'
miRNA:   3'- gUUG--UAUCG--UGGCUGUCgCuCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 196691 0.66 0.986815
Target:  5'- -cGCGUGGCGgaCGGCAucacgaugcugcuGCGGGCCGGc -3'
miRNA:   3'- guUGUAUCGUg-GCUGU-------------CGCUCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 196275 0.67 0.977129
Target:  5'- aCGugGUGGC-CCGAgAGCGuGCUAa- -3'
miRNA:   3'- -GUugUAUCGuGGCUgUCGCuCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 194561 0.66 0.981568
Target:  5'- aGAC-UGGUACCGcUGGCGAcucggcGCCAGAu -3'
miRNA:   3'- gUUGuAUCGUGGCuGUCGCU------CGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 188736 0.67 0.971949
Target:  5'- aUAGCA-GGCGCaCGGCGGCGaAGCCcaccAGGg -3'
miRNA:   3'- -GUUGUaUCGUG-GCUGUCGC-UCGG----UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.