miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 5' -53.5 NC_004065.1 + 213577 0.7 0.905198
Target:  5'- gAACGUGGUACCGGgcucgcUAGUGGGCuCGGGc -3'
miRNA:   3'- gUUGUAUCGUGGCU------GUCGCUCG-GUCU- -5'
15664 5' -53.5 NC_004065.1 + 20719 0.7 0.88347
Target:  5'- aCGAC--GGCACCGACGGCGAcgacggcgaucacgGCgAGGg -3'
miRNA:   3'- -GUUGuaUCGUGGCUGUCGCU--------------CGgUCU- -5'
15664 5' -53.5 NC_004065.1 + 70101 0.7 0.885548
Target:  5'- gCGACGagcAGCACCGGCAGCGGcggcggcggcGCCGa- -3'
miRNA:   3'- -GUUGUa--UCGUGGCUGUCGCU----------CGGUcu -5'
15664 5' -53.5 NC_004065.1 + 72925 0.7 0.885548
Target:  5'- -----aGGCGCCcccGGCGGCGAGUCGGGu -3'
miRNA:   3'- guuguaUCGUGG---CUGUCGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 68578 0.7 0.892326
Target:  5'- gAGCAacGCGgCGGCGGCGAuCCAGAg -3'
miRNA:   3'- gUUGUauCGUgGCUGUCGCUcGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 166143 0.7 0.898877
Target:  5'- aGACGUcGGCGCCGgcgGCAGCGGcGCCGa- -3'
miRNA:   3'- gUUGUA-UCGUGGC---UGUCGCU-CGGUcu -5'
15664 5' -53.5 NC_004065.1 + 65690 0.7 0.898877
Target:  5'- gGACAUcGCGCgGGCGuGCGAGCUGGu -3'
miRNA:   3'- gUUGUAuCGUGgCUGU-CGCUCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 78580 0.7 0.898877
Target:  5'- gCGACAgUGGCAacagCGACGGCGGG-CAGAa -3'
miRNA:   3'- -GUUGU-AUCGUg---GCUGUCGCUCgGUCU- -5'
15664 5' -53.5 NC_004065.1 + 197249 0.7 0.905198
Target:  5'- gAGCggGUGGCguGCCGAUAGgGuGCCGGAu -3'
miRNA:   3'- gUUG--UAUCG--UGGCUGUCgCuCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 1551 0.71 0.878545
Target:  5'- gCGACGUGGUguguaaGCUGACGGCGuGCCugcGAg -3'
miRNA:   3'- -GUUGUAUCG------UGGCUGUCGCuCGGu--CU- -5'
15664 5' -53.5 NC_004065.1 + 61711 0.71 0.856246
Target:  5'- gCGGCGUAGCGgCGGauGCGAGCCAu- -3'
miRNA:   3'- -GUUGUAUCGUgGCUguCGCUCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 100970 0.71 0.848401
Target:  5'- cCGGCAcAGCGCCGucCGGUaGGCCAGGu -3'
miRNA:   3'- -GUUGUaUCGUGGCu-GUCGcUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 18280 0.75 0.658166
Target:  5'- ---aGUAGCGCCGAUAGgacgaaagccgacaCGAGCCGGAc -3'
miRNA:   3'- guugUAUCGUGGCUGUC--------------GCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 164539 0.75 0.681536
Target:  5'- uCGACAUAGCucgcugugucgaGCCGGCGGCGGcGCCGa- -3'
miRNA:   3'- -GUUGUAUCG------------UGGCUGUCGCU-CGGUcu -5'
15664 5' -53.5 NC_004065.1 + 142785 0.73 0.750884
Target:  5'- gGugGUGGCGCCGGgGGCG-GCCAu- -3'
miRNA:   3'- gUugUAUCGUGGCUgUCGCuCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 164146 0.73 0.788422
Target:  5'- aAACGUu-CACCGACGGUGGGCUAGc -3'
miRNA:   3'- gUUGUAucGUGGCUGUCGCUCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 95528 0.72 0.815136
Target:  5'- -cGCAU-GCGCCGAUAGCGA-UCAGAu -3'
miRNA:   3'- guUGUAuCGUGGCUGUCGCUcGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 107356 0.72 0.832131
Target:  5'- -cGCGUAGUcgGCCGACAGCGuGCguugCAGGa -3'
miRNA:   3'- guUGUAUCG--UGGCUGUCGCuCG----GUCU- -5'
15664 5' -53.5 NC_004065.1 + 16858 0.72 0.832131
Target:  5'- -cGCAc-GCACggCGAgGGCGAGCCAGAa -3'
miRNA:   3'- guUGUauCGUG--GCUgUCGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 31146 0.71 0.84036
Target:  5'- cCGACucgGGCAUCGACAccgccGCG-GCCGGAg -3'
miRNA:   3'- -GUUGua-UCGUGGCUGU-----CGCuCGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.