Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15665 | 3' | -57 | NC_004065.1 | + | 93352 | 0.68 | 0.845191 |
Target: 5'- gGCCCG-CCGCCGGCCagACccGCCcgUCg -3' miRNA: 3'- gUGGGCaGGUGGUCGG--UGcaUGGa-AG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 162080 | 0.68 | 0.837323 |
Target: 5'- -cCCCGUCCGCCcGCC-CGU-CCgUCc -3' miRNA: 3'- guGGGCAGGUGGuCGGuGCAuGGaAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 169090 | 0.68 | 0.837323 |
Target: 5'- aUACCCGUCUucUUGGCCACGU-CCUg- -3' miRNA: 3'- -GUGGGCAGGu-GGUCGGUGCAuGGAag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 125134 | 0.69 | 0.812695 |
Target: 5'- cCGCgCCGUCgC-CCAGCCGCGUGgCg-- -3' miRNA: 3'- -GUG-GGCAG-GuGGUCGGUGCAUgGaag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 131895 | 0.69 | 0.81185 |
Target: 5'- gCGCaCCG-CCGCC-GCCugGUucgaguuGCCUUCg -3' miRNA: 3'- -GUG-GGCaGGUGGuCGGugCA-------UGGAAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 152293 | 0.69 | 0.80417 |
Target: 5'- uCGCCCaGUCCugCGGCgGCGgcggUGCCggCg -3' miRNA: 3'- -GUGGG-CAGGugGUCGgUGC----AUGGaaG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 134204 | 0.69 | 0.792869 |
Target: 5'- uGCCCGUCCGCgggucuCGGCCGUGUGagaacauagucaguCCUUCg -3' miRNA: 3'- gUGGGCAGGUG------GUCGGUGCAU--------------GGAAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 23831 | 0.7 | 0.786687 |
Target: 5'- -nCCUGUUCACCAGCC-CGccUGCCUg- -3' miRNA: 3'- guGGGCAGGUGGUCGGuGC--AUGGAag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 89606 | 0.7 | 0.777747 |
Target: 5'- -uCCCGgCCugCGGCCuguCGUGCCUc- -3' miRNA: 3'- guGGGCaGGugGUCGGu--GCAUGGAag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 135315 | 0.7 | 0.768684 |
Target: 5'- gGCCCGcUCCGCgGcuGCCGCGUacGCCUg- -3' miRNA: 3'- gUGGGC-AGGUGgU--CGGUGCA--UGGAag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 189152 | 0.71 | 0.721827 |
Target: 5'- gACCCG-CgCACCuGCCGCGUauGCCUg- -3' miRNA: 3'- gUGGGCaG-GUGGuCGGUGCA--UGGAag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 88739 | 0.71 | 0.712205 |
Target: 5'- aGCaCGUCCACCAGCUugGUGgCg-- -3' miRNA: 3'- gUGgGCAGGUGGUCGGugCAUgGaag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 75113 | 0.71 | 0.70252 |
Target: 5'- uGCCCGUCUACCAccGCCGCcucaACCUg- -3' miRNA: 3'- gUGGGCAGGUGGU--CGGUGca--UGGAag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 20458 | 0.72 | 0.673163 |
Target: 5'- aCGCCCG-CCAgCCAGCCGgcCGggccuCCUUCa -3' miRNA: 3'- -GUGGGCaGGU-GGUCGGU--GCau---GGAAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 198852 | 0.72 | 0.653422 |
Target: 5'- uGCCCGaUCCGCaCA-CCACGUACCa-- -3' miRNA: 3'- gUGGGC-AGGUG-GUcGGUGCAUGGaag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 70309 | 0.72 | 0.653422 |
Target: 5'- gCACCCc-CCACaCGGCCGCGUACaggaaCUUCg -3' miRNA: 3'- -GUGGGcaGGUG-GUCGGUGCAUG-----GAAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 61515 | 0.72 | 0.633616 |
Target: 5'- aGCCCGUCgAC--GCCGCGcagGCCUUCg -3' miRNA: 3'- gUGGGCAGgUGguCGGUGCa--UGGAAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 78542 | 0.72 | 0.623708 |
Target: 5'- aGCCCGUCCGCguGCCGC-UGCUc-- -3' miRNA: 3'- gUGGGCAGGUGguCGGUGcAUGGaag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 198950 | 0.74 | 0.545214 |
Target: 5'- cCGCCCGUggCCACCAGCCGCGagaagGCg-UCu -3' miRNA: 3'- -GUGGGCA--GGUGGUCGGUGCa----UGgaAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 72210 | 0.76 | 0.434654 |
Target: 5'- uGCCCGgcUCCACCGGCgGCGUcGCCUcCg -3' miRNA: 3'- gUGGGC--AGGUGGUCGgUGCA-UGGAaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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