miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 150651 0.66 0.996354
Target:  5'- gCGCgCGGACGcu--GCGGGCGuGCGUGu -3'
miRNA:   3'- -GUG-GCUUGCucuuCGUCUGCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 125381 0.66 0.996354
Target:  5'- gGCUGGGCGAcGgcGCGGugGuGCcgGc -3'
miRNA:   3'- gUGGCUUGCU-CuuCGUCugCuCGuaC- -5'
15666 3' -52 NC_004065.1 + 82380 0.66 0.996354
Target:  5'- aCGCUGAAgGGGGAGCAGGgcuCGGGgAc- -3'
miRNA:   3'- -GUGGCUUgCUCUUCGUCU---GCUCgUac -5'
15666 3' -52 NC_004065.1 + 67142 0.66 0.996354
Target:  5'- gCGCCuGGACGcGAucGCGGACGAGaagGUGa -3'
miRNA:   3'- -GUGG-CUUGCuCUu-CGUCUGCUCg--UAC- -5'
15666 3' -52 NC_004065.1 + 19415 0.66 0.996238
Target:  5'- cCGCCGGcgucggcggagguGCcGGAGGCAccgcgcugcuggcGAUGAGCGUGg -3'
miRNA:   3'- -GUGGCU-------------UGcUCUUCGU-------------CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 149908 0.66 0.995998
Target:  5'- uGCCGGuuggAUGAGggGCgcgcggcucggcaggAGGCGGGCuUGa -3'
miRNA:   3'- gUGGCU----UGCUCuuCG---------------UCUGCUCGuAC- -5'
15666 3' -52 NC_004065.1 + 64914 0.66 0.995745
Target:  5'- uCGCCGGGCGGGAcGCcgccucagAGACGAcgGCGc- -3'
miRNA:   3'- -GUGGCUUGCUCUuCG--------UCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 56599 0.66 0.995745
Target:  5'- uGCCGucguCGAGcGAGCAGGCGGccGCGg- -3'
miRNA:   3'- gUGGCuu--GCUC-UUCGUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 99933 0.66 0.995745
Target:  5'- aGCUGGACGAGGccAGCGGGCuGAuGCu-- -3'
miRNA:   3'- gUGGCUUGCUCU--UCGUCUG-CU-CGuac -5'
15666 3' -52 NC_004065.1 + 82573 0.66 0.995056
Target:  5'- aGCgGGGCGAGAucugcucgucagAGUcGGCGAGCAc- -3'
miRNA:   3'- gUGgCUUGCUCU------------UCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 74799 0.66 0.995056
Target:  5'- gCGCuCGcGCaAGAuGCuGACGAGCGUGg -3'
miRNA:   3'- -GUG-GCuUGcUCUuCGuCUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 90444 0.66 0.995056
Target:  5'- gGCCuGGAguccCGGGAGGCGGGCGAcgGCGg- -3'
miRNA:   3'- gUGG-CUU----GCUCUUCGUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 223124 0.66 0.994279
Target:  5'- uCGCCGGuuucACGGGGauGGCGGACGcGCu-- -3'
miRNA:   3'- -GUGGCU----UGCUCU--UCGUCUGCuCGuac -5'
15666 3' -52 NC_004065.1 + 113111 0.66 0.994279
Target:  5'- uGCCGGACGAGcuGCuguccGACG-GCAa- -3'
miRNA:   3'- gUGGCUUGCUCuuCGu----CUGCuCGUac -5'
15666 3' -52 NC_004065.1 + 45116 0.66 0.994279
Target:  5'- uGCuCGAGCGAGAGGC-GACGcuGCu-- -3'
miRNA:   3'- gUG-GCUUGCUCUUCGuCUGCu-CGuac -5'
15666 3' -52 NC_004065.1 + 21359 0.66 0.994279
Target:  5'- aCACgGAACG-GAGGguGccgauCGAGCGUa -3'
miRNA:   3'- -GUGgCUUGCuCUUCguCu----GCUCGUAc -5'
15666 3' -52 NC_004065.1 + 20381 0.66 0.994279
Target:  5'- -cCCGAACGAGAGGUu--CGAGgGUc -3'
miRNA:   3'- guGGCUUGCUCUUCGucuGCUCgUAc -5'
15666 3' -52 NC_004065.1 + 110181 0.66 0.993768
Target:  5'- gACCuccCGGGAcgcgacggcggccgcGGCGGACGAGCcgGg -3'
miRNA:   3'- gUGGcuuGCUCU---------------UCGUCUGCUCGuaC- -5'
15666 3' -52 NC_004065.1 + 161829 0.66 0.993407
Target:  5'- --aCGGACGGGcGGGCGGACGGGgAc- -3'
miRNA:   3'- gugGCUUGCUC-UUCGUCUGCUCgUac -5'
15666 3' -52 NC_004065.1 + 184851 0.67 0.992431
Target:  5'- gGCCGAGggauCGAGucGAGCGGGCG-GCGg- -3'
miRNA:   3'- gUGGCUU----GCUC--UUCGUCUGCuCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.