miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 56399 0.67 0.999387
Target:  5'- aUGCGAcucgcucgcCGAggcuGCAGAagGCGAGCGCc -3'
miRNA:   3'- gAUGCU---------GCUau--CGUCUa-UGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 23046 0.67 0.999387
Target:  5'- -aGCGACGGUGGCcGGUcGUGAGgACGa -3'
miRNA:   3'- gaUGCUGCUAUCGuCUA-UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 78594 0.67 0.999387
Target:  5'- -aGCGACGGcgGGCAGAaaaGAGguCGa -3'
miRNA:   3'- gaUGCUGCUa-UCGUCUaugCUCguGC- -5'
15667 3' -49.4 NC_004065.1 + 91180 0.67 0.999247
Target:  5'- -gGCGACGGccGCGGAagcgccgucgGCGuGCGCGg -3'
miRNA:   3'- gaUGCUGCUauCGUCUa---------UGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 208743 0.67 0.999247
Target:  5'- -aACGGCGA--GCAGAUA-GAGCAa- -3'
miRNA:   3'- gaUGCUGCUauCGUCUAUgCUCGUgc -5'
15667 3' -49.4 NC_004065.1 + 44297 0.67 0.999247
Target:  5'- -gGCGAUGAU-GCGGAU---GGCGCGg -3'
miRNA:   3'- gaUGCUGCUAuCGUCUAugcUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 59289 0.67 0.999247
Target:  5'- ---gGAgGGUGGUAGGaaaguucGCGAGCACGa -3'
miRNA:   3'- gaugCUgCUAUCGUCUa------UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 76637 0.67 0.999247
Target:  5'- -gGCGGCGAgcucauccGCGGcgGCGccGGCGCGa -3'
miRNA:   3'- gaUGCUGCUau------CGUCuaUGC--UCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 30498 0.67 0.99908
Target:  5'- -cGCGugGuaccgAGCAGAUGUGGGgACGa -3'
miRNA:   3'- gaUGCugCua---UCGUCUAUGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 149454 0.67 0.99908
Target:  5'- -aGCGAcagcagcaggcCGAgcgAGCGGAUcggACGAGCGCc -3'
miRNA:   3'- gaUGCU-----------GCUa--UCGUCUA---UGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 114504 0.67 0.99908
Target:  5'- -gGCGGCaGGguUGGCGGuccCGGGCACGg -3'
miRNA:   3'- gaUGCUG-CU--AUCGUCuauGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 123072 0.67 0.99908
Target:  5'- -cGCGACuacucGCGcAUGCGAGCGCGg -3'
miRNA:   3'- gaUGCUGcuau-CGUcUAUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 146701 0.67 0.999024
Target:  5'- -gACGGCGAcGGCGGGgaaGCcggggaagaagacgGAGCGCGg -3'
miRNA:   3'- gaUGCUGCUaUCGUCUa--UG--------------CUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 32923 0.67 0.998966
Target:  5'- -gGCGACGAagacgGccggucggcucccgcGCGGAUGCGGGCGuCGa -3'
miRNA:   3'- gaUGCUGCUa----U---------------CGUCUAUGCUCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 12718 0.67 0.998883
Target:  5'- aUGCGGCGAUaaacGGCcacGUAaGAGCACGg -3'
miRNA:   3'- gAUGCUGCUA----UCGuc-UAUgCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 72973 0.67 0.998883
Target:  5'- uCU-CGACGAU-GCGGAUgaucccccACGAGgACGa -3'
miRNA:   3'- -GAuGCUGCUAuCGUCUA--------UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 126753 0.67 0.998883
Target:  5'- -cGCGGCGcAUGGCgacgcGGGUGC-AGCGCGc -3'
miRNA:   3'- gaUGCUGC-UAUCG-----UCUAUGcUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 104065 0.67 0.998883
Target:  5'- -gACGACGAUuccAGCgAGA-ACG-GCGCGg -3'
miRNA:   3'- gaUGCUGCUA---UCG-UCUaUGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 76718 0.67 0.998794
Target:  5'- -cGCGuCGAgguugcacuccucGGCGGggACGGGCGCGg -3'
miRNA:   3'- gaUGCuGCUa------------UCGUCuaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 206085 0.68 0.99865
Target:  5'- -aGCGACGcacgAGCAGAcaacaGGGCACa -3'
miRNA:   3'- gaUGCUGCua--UCGUCUaug--CUCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.