miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 229751 0.72 0.976726
Target:  5'- aCUACG-CGGUGGCGcgcccccuGUGCGAGCGCc -3'
miRNA:   3'- -GAUGCuGCUAUCGUc-------UAUGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 229659 0.7 0.993159
Target:  5'- -gGCGGCaGUGGCAGGUggGCGucggGGCGCGc -3'
miRNA:   3'- gaUGCUGcUAUCGUCUA--UGC----UCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 226719 0.76 0.860045
Target:  5'- -aGCGGCGcUGGCAGAagGCGAGCcCGg -3'
miRNA:   3'- gaUGCUGCuAUCGUCUa-UGCUCGuGC- -5'
15667 3' -49.4 NC_004065.1 + 225178 0.68 0.99727
Target:  5'- -gGCGGCGGUGGUGGugguuuucuucgGUuugcuacagucuACGAGCGCGg -3'
miRNA:   3'- gaUGCUGCUAUCGUC------------UA------------UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 223368 0.71 0.986826
Target:  5'- -cGCGGCGGcuuCAGcUGCGGGCACGg -3'
miRNA:   3'- gaUGCUGCUaucGUCuAUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 219428 0.69 0.995593
Target:  5'- -cACGAUGAUGGCuGGAUGCGAugGCcUGa -3'
miRNA:   3'- gaUGCUGCUAUCG-UCUAUGCU--CGuGC- -5'
15667 3' -49.4 NC_004065.1 + 213133 0.68 0.998061
Target:  5'- cCUGCGugGucaccGUAGUGGcGUugGGGCugGa -3'
miRNA:   3'- -GAUGCugC-----UAUCGUC-UAugCUCGugC- -5'
15667 3' -49.4 NC_004065.1 + 208743 0.67 0.999247
Target:  5'- -aACGGCGA--GCAGAUA-GAGCAa- -3'
miRNA:   3'- gaUGCUGCUauCGUCUAUgCUCGUgc -5'
15667 3' -49.4 NC_004065.1 + 206085 0.68 0.99865
Target:  5'- -aGCGACGcacgAGCAGAcaacaGGGCACa -3'
miRNA:   3'- gaUGCUGCua--UCGUCUaug--CUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 203223 0.66 0.999601
Target:  5'- uCUAUGugGAcGGaGGcUugGAGCACGu -3'
miRNA:   3'- -GAUGCugCUaUCgUCuAugCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 203189 0.68 0.99727
Target:  5'- gCUGUGGUGAUacGGCGGAcGCGAGUACGa -3'
miRNA:   3'- -GAUGCUGCUA--UCGUCUaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 201283 0.7 0.993159
Target:  5'- -gGCGGCGGUGGCgAGGcgccGCGcGCACGc -3'
miRNA:   3'- gaUGCUGCUAUCG-UCUa---UGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 200910 0.69 0.996783
Target:  5'- aCUugGGCGAUAaaacGCcGAUcucgccuCGAGCGCGa -3'
miRNA:   3'- -GAugCUGCUAU----CGuCUAu------GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 200787 0.76 0.874396
Target:  5'- -cGCGGCGGUGGCGGGcgACGgcgucucGGCGCGg -3'
miRNA:   3'- gaUGCUGCUAUCGUCUa-UGC-------UCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 199104 0.66 0.9998
Target:  5'- gUACGugGuguGCGGAU-CGGGCAa- -3'
miRNA:   3'- gAUGCugCuauCGUCUAuGCUCGUgc -5'
15667 3' -49.4 NC_004065.1 + 197237 0.7 0.992142
Target:  5'- -aACGACgGAUAcgaGGAUGCGGGCGCc -3'
miRNA:   3'- gaUGCUG-CUAUcg-UCUAUGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 196804 0.69 0.994403
Target:  5'- -cACGACGAggcgguggggggucgUggucaccugcGGCAGGUGCGGGCgACGg -3'
miRNA:   3'- gaUGCUGCU---------------A----------UCGUCUAUGCUCG-UGC- -5'
15667 3' -49.4 NC_004065.1 + 195675 0.68 0.998378
Target:  5'- -gACGGCGAcgcGGCGGGagcgUACGuGUACGg -3'
miRNA:   3'- gaUGCUGCUa--UCGUCU----AUGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 195055 0.7 0.993535
Target:  5'- -cACGGCGucucucugaaguGCAGGUcggGCGAGCGCGc -3'
miRNA:   3'- gaUGCUGCuau---------CGUCUA---UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 194279 0.68 0.99727
Target:  5'- -gACGGCGGcaAGgAGAagaGCGAGCGCGa -3'
miRNA:   3'- gaUGCUGCUa-UCgUCUa--UGCUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.