miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15668 5' -55.3 NC_004065.1 + 163823 0.66 0.984971
Target:  5'- uGGAgaguuCGAaucucuuaCGUCGGUCGUCAUCgUGAg- -3'
miRNA:   3'- -CCU-----GCUg-------GCAGCCAGCAGUAG-GCUga -5'
15668 5' -55.3 NC_004065.1 + 185573 0.66 0.984971
Target:  5'- aGGAaGACUG-CGGUCGUUcgcgauGUCCGcACg -3'
miRNA:   3'- -CCUgCUGGCaGCCAGCAG------UAGGC-UGa -5'
15668 5' -55.3 NC_004065.1 + 43557 0.66 0.983223
Target:  5'- uGACGA-CGUCGuuuuuGUCGUCGUCUGGu- -3'
miRNA:   3'- cCUGCUgGCAGC-----CAGCAGUAGGCUga -5'
15668 5' -55.3 NC_004065.1 + 99360 0.66 0.983223
Target:  5'- cGACGAgCGUUGGcagCGaCGgcgCCGACUg -3'
miRNA:   3'- cCUGCUgGCAGCCa--GCaGUa--GGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 123282 0.66 0.982482
Target:  5'- aGGCGcagcGCCGUCGGaCGUCAcgcucgccggagaCCGACa -3'
miRNA:   3'- cCUGC----UGGCAGCCaGCAGUa------------GGCUGa -5'
15668 5' -55.3 NC_004065.1 + 170841 0.66 0.981325
Target:  5'- cGACGACaaaGUC-GUCGUgAUCCGcGCg -3'
miRNA:   3'- cCUGCUGg--CAGcCAGCAgUAGGC-UGa -5'
15668 5' -55.3 NC_004065.1 + 152401 0.66 0.981325
Target:  5'- gGGACagcGCCGUCGG-CGUCA--CGGCc -3'
miRNA:   3'- -CCUGc--UGGCAGCCaGCAGUagGCUGa -5'
15668 5' -55.3 NC_004065.1 + 52370 0.66 0.980726
Target:  5'- cGGACGACgguucagcggucuaCGUCGGUCuUCGgcgCCGccGCUu -3'
miRNA:   3'- -CCUGCUG--------------GCAGCCAGcAGUa--GGC--UGA- -5'
15668 5' -55.3 NC_004065.1 + 43338 0.66 0.979271
Target:  5'- cGGAUgcccgGACCGUccgaacgugCGGUCuGUCGcgCCGACg -3'
miRNA:   3'- -CCUG-----CUGGCA---------GCCAG-CAGUa-GGCUGa -5'
15668 5' -55.3 NC_004065.1 + 79169 0.66 0.979271
Target:  5'- cGACG-CCGUCGGcagucUCGUCGUCUc--- -3'
miRNA:   3'- cCUGCuGGCAGCC-----AGCAGUAGGcuga -5'
15668 5' -55.3 NC_004065.1 + 213232 0.66 0.979271
Target:  5'- uGGACGAUgGuUCGGUCGUCGguaGcACa -3'
miRNA:   3'- -CCUGCUGgC-AGCCAGCAGUaggC-UGa -5'
15668 5' -55.3 NC_004065.1 + 138817 0.66 0.977055
Target:  5'- cGGACGgcACCGUCGc-CGUCAgUCCGcCg -3'
miRNA:   3'- -CCUGC--UGGCAGCcaGCAGU-AGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 201727 0.66 0.977055
Target:  5'- cGGGuCGACCGggaucucgCGGggagCGUCCGGCUc -3'
miRNA:   3'- -CCU-GCUGGCa-------GCCagcaGUAGGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 115076 0.66 0.977055
Target:  5'- aGGACGcgGCC-UCGGUCGgcUCuUCUGACc -3'
miRNA:   3'- -CCUGC--UGGcAGCCAGC--AGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 96549 0.66 0.977055
Target:  5'- uGGACGAggagUCGcUGGacUCGUCcgCCGACg -3'
miRNA:   3'- -CCUGCU----GGCaGCC--AGCAGuaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 224010 0.66 0.976824
Target:  5'- gGGACGagagggaGCCGacgaaguacUCGGUCGUCG-CCGGu- -3'
miRNA:   3'- -CCUGC-------UGGC---------AGCCAGCAGUaGGCUga -5'
15668 5' -55.3 NC_004065.1 + 107710 0.66 0.974669
Target:  5'- cGGaACGACCGUgUGGauguUCGUCGcgUCGACg -3'
miRNA:   3'- -CC-UGCUGGCA-GCC----AGCAGUa-GGCUGa -5'
15668 5' -55.3 NC_004065.1 + 142208 0.66 0.974669
Target:  5'- gGGAgGACCGUCG-UCGcCAUaucuggauuucgCCGACc -3'
miRNA:   3'- -CCUgCUGGCAGCcAGCaGUA------------GGCUGa -5'
15668 5' -55.3 NC_004065.1 + 112849 0.67 0.972107
Target:  5'- aGAUGuuGCCGUCGGacagcaGcUCGUCCGGCa -3'
miRNA:   3'- cCUGC--UGGCAGCCag----C-AGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 227528 0.67 0.972107
Target:  5'- cGGACGuCgggggGUCGGUC-UCAUCCGGg- -3'
miRNA:   3'- -CCUGCuGg----CAGCCAGcAGUAGGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.