miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15668 5' -55.3 NC_004065.1 + 17917 1.1 0.006414
Target:  5'- cGGACGACCGUCGGUCGUCAUCCGACUc -3'
miRNA:   3'- -CCUGCUGGCAGCCAGCAGUAGGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 172180 0.78 0.507488
Target:  5'- uGGGCGAaccgUCGUCGGUCGUC-UCCGGa- -3'
miRNA:   3'- -CCUGCU----GGCAGCCAGCAGuAGGCUga -5'
15668 5' -55.3 NC_004065.1 + 121463 0.77 0.545074
Target:  5'- cGACGACCagGUCGGUCGgcgCGUCCG-Cg -3'
miRNA:   3'- cCUGCUGG--CAGCCAGCa--GUAGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 118926 0.75 0.639071
Target:  5'- aGGACaACgCGUCGucccaggacgaggcGUCGUCGUCCGACg -3'
miRNA:   3'- -CCUGcUG-GCAGC--------------CAGCAGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 17669 0.74 0.690599
Target:  5'- uGACGACCGaCGGUCGUCcgUCG-Cg -3'
miRNA:   3'- cCUGCUGGCaGCCAGCAGuaGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 135530 0.74 0.690599
Target:  5'- cGGAuCGACCGUCGacGUCGaCGUCgGACg -3'
miRNA:   3'- -CCU-GCUGGCAGC--CAGCaGUAGgCUGa -5'
15668 5' -55.3 NC_004065.1 + 101718 0.74 0.70978
Target:  5'- aGGugGugcuCCGUCGGU-GUC-UCCGACa -3'
miRNA:   3'- -CCugCu---GGCAGCCAgCAGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 197269 0.73 0.774603
Target:  5'- uGACGGUCGUCGGUCGgaucgUCAUCCG-Ca -3'
miRNA:   3'- cCUGCUGGCAGCCAGC-----AGUAGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 202730 0.72 0.792199
Target:  5'- aGGACGGCCGuuUCGGcUCGUgucccgagcgcCGUCCGAa- -3'
miRNA:   3'- -CCUGCUGGC--AGCC-AGCA-----------GUAGGCUga -5'
15668 5' -55.3 NC_004065.1 + 227482 0.72 0.792199
Target:  5'- cGGACGGCCGUCGaccgaUCGgacCAgCCGACg -3'
miRNA:   3'- -CCUGCUGGCAGCc----AGCa--GUaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 151422 0.72 0.821691
Target:  5'- aGGGCGGCCGgcgcgccagcucgCGGUCGccgacgaUCAUCgCGGCg -3'
miRNA:   3'- -CCUGCUGGCa------------GCCAGC-------AGUAG-GCUGa -5'
15668 5' -55.3 NC_004065.1 + 162140 0.71 0.825754
Target:  5'- cGACGAgCGUCGGUCaggCcgCCGAUg -3'
miRNA:   3'- cCUGCUgGCAGCCAGca-GuaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 224101 0.71 0.841597
Target:  5'- cGGGCGGCCGaguaCGaGUUGUCGcucgcguccUCCGACa -3'
miRNA:   3'- -CCUGCUGGCa---GC-CAGCAGU---------AGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 76747 0.71 0.856746
Target:  5'- cGGGCGcggcGCCGgCGGccUCGUCAucgUCCGGCg -3'
miRNA:   3'- -CCUGC----UGGCaGCC--AGCAGU---AGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 211899 0.71 0.856746
Target:  5'- ---gGACC-UgGGUCGUCAUCUGACa -3'
miRNA:   3'- ccugCUGGcAgCCAGCAGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 140030 0.71 0.864046
Target:  5'- cGACGGcuCCGUCGGguucgcucccgUCGUCGucccUCCGGCUc -3'
miRNA:   3'- cCUGCU--GGCAGCC-----------AGCAGU----AGGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 99565 0.7 0.871156
Target:  5'- cGGACGGCCGU-GGUgCGUCAgguUCUGGg- -3'
miRNA:   3'- -CCUGCUGGCAgCCA-GCAGU---AGGCUga -5'
15668 5' -55.3 NC_004065.1 + 222836 0.7 0.878069
Target:  5'- aGGCGGCCacagcUCGGUCGUCAU-UGACa -3'
miRNA:   3'- cCUGCUGGc----AGCCAGCAGUAgGCUGa -5'
15668 5' -55.3 NC_004065.1 + 149070 0.7 0.884784
Target:  5'- aGGcCGAUCGg-GGUCGUCGUCaCGAUc -3'
miRNA:   3'- -CCuGCUGGCagCCAGCAGUAG-GCUGa -5'
15668 5' -55.3 NC_004065.1 + 131573 0.7 0.884784
Target:  5'- aGGGCGACCaccaGGUCG---UCCGACUg -3'
miRNA:   3'- -CCUGCUGGcag-CCAGCaguAGGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.