miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15668 5' -55.3 NC_004065.1 + 96549 0.66 0.977055
Target:  5'- uGGACGAggagUCGcUGGacUCGUCcgCCGACg -3'
miRNA:   3'- -CCUGCU----GGCaGCC--AGCAGuaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 96771 0.67 0.956467
Target:  5'- cGGAC--UCGUC-GUCGUCcUCCGACg -3'
miRNA:   3'- -CCUGcuGGCAGcCAGCAGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 97225 0.68 0.948804
Target:  5'- gGGAUGuuCGg-GGUCG-CGUCCGGCg -3'
miRNA:   3'- -CCUGCugGCagCCAGCaGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 99360 0.66 0.983223
Target:  5'- cGACGAgCGUUGGcagCGaCGgcgCCGACUg -3'
miRNA:   3'- cCUGCUgGCAGCCa--GCaGUa--GGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 99565 0.7 0.871156
Target:  5'- cGGACGGCCGU-GGUgCGUCAgguUCUGGg- -3'
miRNA:   3'- -CCUGCUGGCAgCCA-GCAGU---AGGCUga -5'
15668 5' -55.3 NC_004065.1 + 101718 0.74 0.70978
Target:  5'- aGGugGugcuCCGUCGGU-GUC-UCCGACa -3'
miRNA:   3'- -CCugCu---GGCAGCCAgCAGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 107710 0.66 0.974669
Target:  5'- cGGaACGACCGUgUGGauguUCGUCGcgUCGACg -3'
miRNA:   3'- -CC-UGCUGGCA-GCC----AGCAGUa-GGCUGa -5'
15668 5' -55.3 NC_004065.1 + 112849 0.67 0.972107
Target:  5'- aGAUGuuGCCGUCGGacagcaGcUCGUCCGGCa -3'
miRNA:   3'- cCUGC--UGGCAGCCag----C-AGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 115076 0.66 0.977055
Target:  5'- aGGACGcgGCC-UCGGUCGgcUCuUCUGACc -3'
miRNA:   3'- -CCUGC--UGGcAGCCAGC--AGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 118926 0.75 0.639071
Target:  5'- aGGACaACgCGUCGucccaggacgaggcGUCGUCGUCCGACg -3'
miRNA:   3'- -CCUGcUG-GCAGC--------------CAGCAGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 120983 0.68 0.948804
Target:  5'- -cAUGACgGUgCGGUCGUCGUUuaCGACg -3'
miRNA:   3'- ccUGCUGgCA-GCCAGCAGUAG--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 121463 0.77 0.545074
Target:  5'- cGACGACCagGUCGGUCGgcgCGUCCG-Cg -3'
miRNA:   3'- cCUGCUGG--CAGCCAGCa--GUAGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 123282 0.66 0.982482
Target:  5'- aGGCGcagcGCCGUCGGaCGUCAcgcucgccggagaCCGACa -3'
miRNA:   3'- cCUGC----UGGCAGCCaGCAGUa------------GGCUGa -5'
15668 5' -55.3 NC_004065.1 + 130358 0.67 0.966432
Target:  5'- cGGACG-CUGUCGGcgccgCG-CcgCCGGCUu -3'
miRNA:   3'- -CCUGCuGGCAGCCa----GCaGuaGGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 131573 0.7 0.884784
Target:  5'- aGGGCGACCaccaGGUCG---UCCGACUg -3'
miRNA:   3'- -CCUGCUGGcag-CCAGCaguAGGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 131823 0.67 0.969363
Target:  5'- cGGACGACCuggUGGUCGcccugaUCAUggCCGugUa -3'
miRNA:   3'- -CCUGCUGGca-GCCAGC------AGUA--GGCugA- -5'
15668 5' -55.3 NC_004065.1 + 132375 0.68 0.940295
Target:  5'- cGGGCaGGCCGUCGcGUCGcccuUC-UCCGAg- -3'
miRNA:   3'- -CCUG-CUGGCAGC-CAGC----AGuAGGCUga -5'
15668 5' -55.3 NC_004065.1 + 135230 0.7 0.884784
Target:  5'- uGuCGACCGUCucGUCGUC-UCCGAUg -3'
miRNA:   3'- cCuGCUGGCAGc-CAGCAGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 135530 0.74 0.690599
Target:  5'- cGGAuCGACCGUCGacGUCGaCGUCgGACg -3'
miRNA:   3'- -CCU-GCUGGCAGC--CAGCaGUAGgCUGa -5'
15668 5' -55.3 NC_004065.1 + 135814 0.69 0.92068
Target:  5'- uGACGGCCGccUCcccGUCGUCcgcccGUCCGACg -3'
miRNA:   3'- cCUGCUGGC--AGc--CAGCAG-----UAGGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.