Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15668 | 5' | -55.3 | NC_004065.1 | + | 97225 | 0.68 | 0.948804 |
Target: 5'- gGGAUGuuCGg-GGUCG-CGUCCGGCg -3' miRNA: 3'- -CCUGCugGCagCCAGCaGUAGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 131573 | 0.7 | 0.884784 |
Target: 5'- aGGGCGACCaccaGGUCG---UCCGACUg -3' miRNA: 3'- -CCUGCUGGcag-CCAGCaguAGGCUGA- -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 149070 | 0.7 | 0.884784 |
Target: 5'- aGGcCGAUCGg-GGUCGUCGUCaCGAUc -3' miRNA: 3'- -CCuGCUGGCagCCAGCAGUAG-GCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 149611 | 0.7 | 0.897597 |
Target: 5'- aGACGACC--CGGUUGUCGUCCa--- -3' miRNA: 3'- cCUGCUGGcaGCCAGCAGUAGGcuga -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 140230 | 0.69 | 0.92068 |
Target: 5'- aGACGGCCGcCGauGUCG-UAUCCGAUa -3' miRNA: 3'- cCUGCUGGCaGC--CAGCaGUAGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 22919 | 0.68 | 0.935248 |
Target: 5'- uGGCGGCgGUCGGcgguuccgucucgUCGUCAgauugucgCCGGCa -3' miRNA: 3'- cCUGCUGgCAGCC-------------AGCAGUa-------GGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 199221 | 0.68 | 0.935717 |
Target: 5'- aGGCGAuguaccguccguCCGUCaGUCGUCAUCguCGGCg -3' miRNA: 3'- cCUGCU------------GGCAGcCAGCAGUAG--GCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 132375 | 0.68 | 0.940295 |
Target: 5'- cGGGCaGGCCGUCGcGUCGcccuUC-UCCGAg- -3' miRNA: 3'- -CCUG-CUGGCAGC-CAGC----AGuAGGCUga -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 150894 | 0.68 | 0.944656 |
Target: 5'- cGACGAguCCGUCGGgaacaaGggGUCCGACg -3' miRNA: 3'- cCUGCU--GGCAGCCag----CagUAGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 222836 | 0.7 | 0.878069 |
Target: 5'- aGGCGGCCacagcUCGGUCGUCAU-UGACa -3' miRNA: 3'- cCUGCUGGc----AGCCAGCAGUAgGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 99565 | 0.7 | 0.871156 |
Target: 5'- cGGACGGCCGU-GGUgCGUCAgguUCUGGg- -3' miRNA: 3'- -CCUGCUGGCAgCCA-GCAGU---AGGCUga -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 140030 | 0.71 | 0.864046 |
Target: 5'- cGACGGcuCCGUCGGguucgcucccgUCGUCGucccUCCGGCUc -3' miRNA: 3'- cCUGCU--GGCAGCC-----------AGCAGU----AGGCUGA- -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 121463 | 0.77 | 0.545074 |
Target: 5'- cGACGACCagGUCGGUCGgcgCGUCCG-Cg -3' miRNA: 3'- cCUGCUGG--CAGCCAGCa--GUAGGCuGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 17669 | 0.74 | 0.690599 |
Target: 5'- uGACGACCGaCGGUCGUCcgUCG-Cg -3' miRNA: 3'- cCUGCUGGCaGCCAGCAGuaGGCuGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 135530 | 0.74 | 0.690599 |
Target: 5'- cGGAuCGACCGUCGacGUCGaCGUCgGACg -3' miRNA: 3'- -CCU-GCUGGCAGC--CAGCaGUAGgCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 101718 | 0.74 | 0.70978 |
Target: 5'- aGGugGugcuCCGUCGGU-GUC-UCCGACa -3' miRNA: 3'- -CCugCu---GGCAGCCAgCAGuAGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 202730 | 0.72 | 0.792199 |
Target: 5'- aGGACGGCCGuuUCGGcUCGUgucccgagcgcCGUCCGAa- -3' miRNA: 3'- -CCUGCUGGC--AGCC-AGCA-----------GUAGGCUga -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 227482 | 0.72 | 0.792199 |
Target: 5'- cGGACGGCCGUCGaccgaUCGgacCAgCCGACg -3' miRNA: 3'- -CCUGCUGGCAGCc----AGCa--GUaGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 211899 | 0.71 | 0.856746 |
Target: 5'- ---gGACC-UgGGUCGUCAUCUGACa -3' miRNA: 3'- ccugCUGGcAgCCAGCAGUAGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 76747 | 0.71 | 0.856746 |
Target: 5'- cGGGCGcggcGCCGgCGGccUCGUCAucgUCCGGCg -3' miRNA: 3'- -CCUGC----UGGCaGCC--AGCAGU---AGGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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