miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15668 5' -55.3 NC_004065.1 + 17917 1.1 0.006414
Target:  5'- cGGACGACCGUCGGUCGUCAUCCGACUc -3'
miRNA:   3'- -CCUGCUGGCAGCCAGCAGUAGGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 9543 0.68 0.95274
Target:  5'- cGGCGAUCG-CGGUCGgcgUGUgCGACg -3'
miRNA:   3'- cCUGCUGGCaGCCAGCa--GUAgGCUGa -5'
15668 5' -55.3 NC_004065.1 + 96771 0.67 0.956467
Target:  5'- cGGAC--UCGUC-GUCGUCcUCCGACg -3'
miRNA:   3'- -CCUGcuGGCAGcCAGCAGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 163823 0.66 0.984971
Target:  5'- uGGAgaguuCGAaucucuuaCGUCGGUCGUCAUCgUGAg- -3'
miRNA:   3'- -CCU-----GCUg-------GCAGCCAGCAGUAG-GCUga -5'
15668 5' -55.3 NC_004065.1 + 162140 0.71 0.825754
Target:  5'- cGACGAgCGUCGGUCaggCcgCCGAUg -3'
miRNA:   3'- cCUGCUgGCAGCCAGca-GuaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 224101 0.71 0.841597
Target:  5'- cGGGCGGCCGaguaCGaGUUGUCGcucgcguccUCCGACa -3'
miRNA:   3'- -CCUGCUGGCa---GC-CAGCAGU---------AGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 44927 0.69 0.903689
Target:  5'- cGACGACCaUCGcuUCGUCG-CCGACg -3'
miRNA:   3'- cCUGCUGGcAGCc-AGCAGUaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 135814 0.69 0.92068
Target:  5'- uGACGGCCGccUCcccGUCGUCcgcccGUCCGACg -3'
miRNA:   3'- cCUGCUGGC--AGc--CAGCAG-----UAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 89174 0.68 0.944656
Target:  5'- cGACGGCCGcUCGcUCGUC-UCCGuCa -3'
miRNA:   3'- cCUGCUGGC-AGCcAGCAGuAGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 191691 0.68 0.95274
Target:  5'- aGGACu-CC-UCGGUCGUCA-CCGAg- -3'
miRNA:   3'- -CCUGcuGGcAGCCAGCAGUaGGCUga -5'
15668 5' -55.3 NC_004065.1 + 120983 0.68 0.948804
Target:  5'- -cAUGACgGUgCGGUCGUCGUUuaCGACg -3'
miRNA:   3'- ccUGCUGgCA-GCCAGCAGUAG--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 8313 0.68 0.944656
Target:  5'- aGGACuGACCGU-GGUCGUUggucugguaGUCgGGCg -3'
miRNA:   3'- -CCUG-CUGGCAgCCAGCAG---------UAGgCUGa -5'
15668 5' -55.3 NC_004065.1 + 118926 0.75 0.639071
Target:  5'- aGGACaACgCGUCGucccaggacgaggcGUCGUCGUCCGACg -3'
miRNA:   3'- -CCUGcUG-GCAGC--------------CAGCAGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 68628 0.68 0.948804
Target:  5'- cGGCGAUCuucgccUCGGUCGUCGUCUGuuCUc -3'
miRNA:   3'- cCUGCUGGc-----AGCCAGCAGUAGGCu-GA- -5'
15668 5' -55.3 NC_004065.1 + 197269 0.73 0.774603
Target:  5'- uGACGGUCGUCGGUCGgaucgUCAUCCG-Ca -3'
miRNA:   3'- cCUGCUGGCAGCCAGC-----AGUAGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 31124 0.69 0.930923
Target:  5'- cGGGCGcucgaacccGCCGUCgacaggcuGGUCGUCGU-CGGCUu -3'
miRNA:   3'- -CCUGC---------UGGCAG--------CCAGCAGUAgGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 53691 0.68 0.948804
Target:  5'- cGACcACCGUCGGUCGgggCGagaaCGACg -3'
miRNA:   3'- cCUGcUGGCAGCCAGCa--GUag--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 56053 0.67 0.956467
Target:  5'- aGACGACC--UGGUCGUCAgCCG-Cg -3'
miRNA:   3'- cCUGCUGGcaGCCAGCAGUaGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 151422 0.72 0.821691
Target:  5'- aGGGCGGCCGgcgcgccagcucgCGGUCGccgacgaUCAUCgCGGCg -3'
miRNA:   3'- -CCUGCUGGCa------------GCCAGC-------AGUAG-GCUGa -5'
15668 5' -55.3 NC_004065.1 + 135230 0.7 0.884784
Target:  5'- uGuCGACCGUCucGUCGUC-UCCGAUg -3'
miRNA:   3'- cCuGCUGGCAGc-CAGCAGuAGGCUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.