miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 36636 0.65 0.944038
Target:  5'- uGGCGGCGGCAgCgagagcgacgauagCGACGcacucgccugucgugGCUCGGa -3'
miRNA:   3'- -CUGUCGCCGUgGaa------------GCUGC---------------UGAGCCa -5'
15672 3' -57 NC_004065.1 + 121312 0.66 0.941844
Target:  5'- gGGCAGCGGCcCCgcacUCGG-GGCUCGu- -3'
miRNA:   3'- -CUGUCGCCGuGGa---AGCUgCUGAGCca -5'
15672 3' -57 NC_004065.1 + 29976 0.66 0.941844
Target:  5'- uGGCGGCGGCGg---CGGCGGCagUGGUa -3'
miRNA:   3'- -CUGUCGCCGUggaaGCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 20718 0.66 0.941844
Target:  5'- cACGaCGGCACCgaCGGCGACgaCGGc -3'
miRNA:   3'- cUGUcGCCGUGGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 201171 0.66 0.941399
Target:  5'- cGCAGCaGCGCCgacaccaagCGGCGcgucccgGCUCGGg -3'
miRNA:   3'- cUGUCGcCGUGGaa-------GCUGC-------UGAGCCa -5'
15672 3' -57 NC_004065.1 + 67130 0.66 0.93729
Target:  5'- gGACAGCGGCgcgcGCCUggaCG-CGAUcgCGGa -3'
miRNA:   3'- -CUGUCGCCG----UGGAa--GCuGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 78581 0.66 0.93729
Target:  5'- cGACAGUGGCAacagCGACGGCg-GGc -3'
miRNA:   3'- -CUGUCGCCGUggaaGCUGCUGagCCa -5'
15672 3' -57 NC_004065.1 + 145327 0.66 0.932515
Target:  5'- --uGGCGGCGCaCUUCccCGGCaUCGGUu -3'
miRNA:   3'- cugUCGCCGUG-GAAGcuGCUG-AGCCA- -5'
15672 3' -57 NC_004065.1 + 195730 0.66 0.932515
Target:  5'- cGACAGCGagaGCGacucagaCUUCGACauggagucgGACUCGGa -3'
miRNA:   3'- -CUGUCGC---CGUg------GAAGCUG---------CUGAGCCa -5'
15672 3' -57 NC_004065.1 + 98262 0.66 0.932515
Target:  5'- gGACGGCGGC-CCUgggCGcGCGcCUCGcGg -3'
miRNA:   3'- -CUGUCGCCGuGGAa--GC-UGCuGAGC-Ca -5'
15672 3' -57 NC_004065.1 + 115837 0.66 0.932515
Target:  5'- --gAGCGGcCGCCUccuccUCGuACGAgUCGGg -3'
miRNA:   3'- cugUCGCC-GUGGA-----AGC-UGCUgAGCCa -5'
15672 3' -57 NC_004065.1 + 62491 0.66 0.932025
Target:  5'- cGCGGCGGUAgcguuggUCUUCGGC-AUUCGGg -3'
miRNA:   3'- cUGUCGCCGU-------GGAAGCUGcUGAGCCa -5'
15672 3' -57 NC_004065.1 + 115197 0.66 0.927517
Target:  5'- -cCGGCGGCGCCgacUGAUGAUgaucaccggCGGUg -3'
miRNA:   3'- cuGUCGCCGUGGaa-GCUGCUGa--------GCCA- -5'
15672 3' -57 NC_004065.1 + 200787 0.66 0.927517
Target:  5'- cGCGGCGGUGgCgggCGACGGCgucUCGGc -3'
miRNA:   3'- cUGUCGCCGUgGaa-GCUGCUG---AGCCa -5'
15672 3' -57 NC_004065.1 + 151092 0.66 0.927517
Target:  5'- gGGCcuGGUGGCGCCcgagcUCGGCGACgaCGGc -3'
miRNA:   3'- -CUG--UCGCCGUGGa----AGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 110442 0.66 0.927517
Target:  5'- gGGCGGCGGCGCg-UCG-CGGCcgccgcagaggUCGGg -3'
miRNA:   3'- -CUGUCGCCGUGgaAGCuGCUG-----------AGCCa -5'
15672 3' -57 NC_004065.1 + 45986 0.66 0.927517
Target:  5'- aACGGCgaccugGGCGCCguggCGGCGuugaACUCGGg -3'
miRNA:   3'- cUGUCG------CCGUGGaa--GCUGC----UGAGCCa -5'
15672 3' -57 NC_004065.1 + 230201 0.66 0.927517
Target:  5'- uGCcGCGGCGCCcUCGGCGGCa---- -3'
miRNA:   3'- cUGuCGCCGUGGaAGCUGCUGagcca -5'
15672 3' -57 NC_004065.1 + 202480 0.66 0.927517
Target:  5'- gGAgAGCGGCACCaagCucUGugUCGGg -3'
miRNA:   3'- -CUgUCGCCGUGGaa-GcuGCugAGCCa -5'
15672 3' -57 NC_004065.1 + 143705 0.66 0.927517
Target:  5'- cGACgcagAGCGGCACC-UCGuCGcAgUCGGa -3'
miRNA:   3'- -CUG----UCGCCGUGGaAGCuGC-UgAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.