miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 73972 0.71 0.719399
Target:  5'- aGCAGUGGCGCCagcagCGGCGGCggaGGa -3'
miRNA:   3'- cUGUCGCCGUGGaa---GCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 146298 0.71 0.728941
Target:  5'- cGGCAuccucggucGUGGCGCCUUCGGCGAUgauGGa -3'
miRNA:   3'- -CUGU---------CGCCGUGGAAGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 27400 0.71 0.738404
Target:  5'- aGCGGCGGCAUCgUCGuCGACUCc-- -3'
miRNA:   3'- cUGUCGCCGUGGaAGCuGCUGAGcca -5'
15672 3' -57 NC_004065.1 + 24847 0.71 0.738404
Target:  5'- cGGCGGCGGCGgUggCGGCGACgacacgcgCGGa -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-------GCCa -5'
15672 3' -57 NC_004065.1 + 27282 0.71 0.738404
Target:  5'- aGAcCGGCGGCGCCgcCGACGACgCGu- -3'
miRNA:   3'- -CU-GUCGCCGUGGaaGCUGCUGaGCca -5'
15672 3' -57 NC_004065.1 + 199648 0.71 0.738404
Target:  5'- --gAGCGGCACCUggGACGAgaUGGa -3'
miRNA:   3'- cugUCGCCGUGGAagCUGCUgaGCCa -5'
15672 3' -57 NC_004065.1 + 96769 0.71 0.738404
Target:  5'- cGGCggaGGCGGCAucgcggccgUCUUCGACGACUCuuGGa -3'
miRNA:   3'- -CUG---UCGCCGU---------GGAAGCUGCUGAG--CCa -5'
15672 3' -57 NC_004065.1 + 154152 0.7 0.766244
Target:  5'- gGGCGGUGGCGgCggCGGCGGCggCGGc -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 141111 0.7 0.775312
Target:  5'- -uCAGCGGCAUCgcCGACGcGCUCaGGUu -3'
miRNA:   3'- cuGUCGCCGUGGaaGCUGC-UGAG-CCA- -5'
15672 3' -57 NC_004065.1 + 36209 0.7 0.784262
Target:  5'- aGCAGCGGCGCgagucCGACGACcugCGGc -3'
miRNA:   3'- cUGUCGCCGUGgaa--GCUGCUGa--GCCa -5'
15672 3' -57 NC_004065.1 + 113772 0.7 0.793084
Target:  5'- cGCGGCGGCAga--CGAcCGACUCGGg -3'
miRNA:   3'- cUGUCGCCGUggaaGCU-GCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 48104 0.7 0.793084
Target:  5'- uGGCGGCGGCGgUggCGGCGGCggUGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 200281 0.7 0.793084
Target:  5'- cGCGGaaCGGCACCUgccccUGACGACcgCGGUg -3'
miRNA:   3'- cUGUC--GCCGUGGAa----GCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 35626 0.7 0.793084
Target:  5'- cGGCGGCGGCGgCggggaugucaUCGGCGACagGGUc -3'
miRNA:   3'- -CUGUCGCCGUgGa---------AGCUGCUGagCCA- -5'
15672 3' -57 NC_004065.1 + 166158 0.7 0.793959
Target:  5'- cGGCAGCGGCGCCgacgucgugcaccgCGAUGugUCuGa -3'
miRNA:   3'- -CUGUCGCCGUGGaa------------GCUGCugAGcCa -5'
15672 3' -57 NC_004065.1 + 1428 0.69 0.810314
Target:  5'- cGGCAGCGGCGCC---GACGACacaaUGGg -3'
miRNA:   3'- -CUGUCGCCGUGGaagCUGCUGa---GCCa -5'
15672 3' -57 NC_004065.1 + 62094 0.69 0.818707
Target:  5'- cGACAGCGGCgcgacGCCUuguUUGACGACgccgUCGaGUc -3'
miRNA:   3'- -CUGUCGCCG-----UGGA---AGCUGCUG----AGC-CA- -5'
15672 3' -57 NC_004065.1 + 152309 0.69 0.818707
Target:  5'- cGGCGGCGGUGCCggCGGgGACgaugaCGGc -3'
miRNA:   3'- -CUGUCGCCGUGGaaGCUgCUGa----GCCa -5'
15672 3' -57 NC_004065.1 + 56125 0.69 0.818707
Target:  5'- cGACGGCGGCgcucGCCUUCuGCaGcCUCGGc -3'
miRNA:   3'- -CUGUCGCCG----UGGAAGcUG-CuGAGCCa -5'
15672 3' -57 NC_004065.1 + 76622 0.69 0.826942
Target:  5'- cGCGGCGGCGCCggcgCGAUGGagaUCGa- -3'
miRNA:   3'- cUGUCGCCGUGGaa--GCUGCUg--AGCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.