miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 193930 0.66 0.802762
Target:  5'- --cGCCUGAGuCGCGcGGACCaGAgGugGCa -3'
miRNA:   3'- gucCGGGCUC-GCGC-UCUGG-CU-CugCG- -5'
15673 3' -60.7 NC_004065.1 + 135339 0.66 0.802762
Target:  5'- aAGGUCagGGGcCGCGAGAUCaaggccAGACGCg -3'
miRNA:   3'- gUCCGGg-CUC-GCGCUCUGGc-----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 92517 0.66 0.811029
Target:  5'- -uGGCCCGGugccucgcgcGCGCGuacGGGCgGgcGGGCGCg -3'
miRNA:   3'- guCCGGGCU----------CGCGC---UCUGgC--UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 161027 0.66 0.802762
Target:  5'- -cGGCaUCGAcGUGCaGGGGCCGGucGACGCu -3'
miRNA:   3'- guCCG-GGCU-CGCG-CUCUGGCU--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 74648 0.66 0.802762
Target:  5'- cCGGGUCUGAG-GUccGGACCGcGGCGCg -3'
miRNA:   3'- -GUCCGGGCUCgCGc-UCUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 27919 0.66 0.802762
Target:  5'- gCAGGaaCgCGAGCGCcgccGACaGAGACGCa -3'
miRNA:   3'- -GUCC--GgGCUCGCGcu--CUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 207796 0.66 0.841852
Target:  5'- uCAGGCgCGAcgacgcggagcGCGCGgcgaggaGGACCGAcGACcGCu -3'
miRNA:   3'- -GUCCGgGCU-----------CGCGC-------UCUGGCU-CUG-CG- -5'
15673 3' -60.7 NC_004065.1 + 135647 0.66 0.842611
Target:  5'- aCGGGgUCGGGCGCG--GCCGGcGCGUc -3'
miRNA:   3'- -GUCCgGGCUCGCGCucUGGCUcUGCG- -5'
15673 3' -60.7 NC_004065.1 + 182609 0.66 0.811029
Target:  5'- gCGGGUCCGAuGCGCuucAGuaGCCGGGAagguCGCu -3'
miRNA:   3'- -GUCCGGGCU-CGCGc--UC--UGGCUCU----GCG- -5'
15673 3' -60.7 NC_004065.1 + 141812 0.66 0.811029
Target:  5'- gCAGGuCuuGcGCGCGAcGCCGaAGAgCGCg -3'
miRNA:   3'- -GUCC-GggCuCGCGCUcUGGC-UCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 68911 0.66 0.834952
Target:  5'- gAGGUgacgCCGAGCGCGgAGAUCaAGaaguuGCGCg -3'
miRNA:   3'- gUCCG----GGCUCGCGC-UCUGGcUC-----UGCG- -5'
15673 3' -60.7 NC_004065.1 + 186846 0.66 0.811029
Target:  5'- gAGGauCCCGAGUGUGAGAUguuuaucaUGguGGACGCc -3'
miRNA:   3'- gUCC--GGGCUCGCGCUCUG--------GC--UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 126243 0.66 0.82713
Target:  5'- uCAcGCCCGuGCgGCG-GAUCGAGcCGCc -3'
miRNA:   3'- -GUcCGGGCuCG-CGCuCUGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 223901 0.66 0.819154
Target:  5'- --aGUCCGcuCGCGaAGGCCGAGACcaGCg -3'
miRNA:   3'- gucCGGGCucGCGC-UCUGGCUCUG--CG- -5'
15673 3' -60.7 NC_004065.1 + 72099 0.66 0.84033
Target:  5'- -cGGCCUGAuCGCcAGACUGgacaggaggacgguGGACGCg -3'
miRNA:   3'- guCCGGGCUcGCGcUCUGGC--------------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 117400 0.66 0.834952
Target:  5'- -cGGCCgCGcGCGCuGGGCuCGcGGCGCg -3'
miRNA:   3'- guCCGG-GCuCGCGcUCUG-GCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 43378 0.67 0.768412
Target:  5'- -cGGCCggcggucuucgCGAGCGCGGaucggcGCCGGGuCGCg -3'
miRNA:   3'- guCCGG-----------GCUCGCGCUc-----UGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 29923 0.67 0.767529
Target:  5'- gAGGaCCUGGGCguccucuucgccgGCGAGGa-GGGACGCg -3'
miRNA:   3'- gUCC-GGGCUCG-------------CGCUCUggCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 127076 0.67 0.777177
Target:  5'- aCAGGUCCcucGAGUGgccacCGGGGCCGGGAuccccaccuCGCg -3'
miRNA:   3'- -GUCCGGG---CUCGC-----GCUCUGGCUCU---------GCG- -5'
15673 3' -60.7 NC_004065.1 + 86990 0.67 0.768412
Target:  5'- aAGGgCCGAggcgGCGUcgGGGGCCGGGGCa- -3'
miRNA:   3'- gUCCgGGCU----CGCG--CUCUGGCUCUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.