miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 225597 0.66 0.834952
Target:  5'- gAGGCCCGAGggucaGCGucAGGCCcgccGugGCc -3'
miRNA:   3'- gUCCGGGCUCg----CGC--UCUGGcu--CugCG- -5'
15673 3' -60.7 NC_004065.1 + 127233 0.66 0.842611
Target:  5'- gAGGaUCGGGCGCGGuGGCgGGGAUGa -3'
miRNA:   3'- gUCCgGGCUCGCGCU-CUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 66612 0.66 0.842611
Target:  5'- aCAGGauCCgGAGcCGCG-GGCUGcGGCGCu -3'
miRNA:   3'- -GUCC--GGgCUC-GCGCuCUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 117400 0.66 0.834952
Target:  5'- -cGGCCgCGcGCGCuGGGCuCGcGGCGCg -3'
miRNA:   3'- guCCGG-GCuCGCGcUCUG-GCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 182609 0.66 0.811029
Target:  5'- gCGGGUCCGAuGCGCuucAGuaGCCGGGAagguCGCu -3'
miRNA:   3'- -GUCCGGGCU-CGCGc--UC--UGGCUCU----GCG- -5'
15673 3' -60.7 NC_004065.1 + 68911 0.66 0.834952
Target:  5'- gAGGUgacgCCGAGCGCGgAGAUCaAGaaguuGCGCg -3'
miRNA:   3'- gUCCG----GGCUCGCGC-UCUGGcUC-----UGCG- -5'
15673 3' -60.7 NC_004065.1 + 98800 0.66 0.830278
Target:  5'- uUAGGCCgGgugccAGCGUG-GGCCGGacggauuuauuccuuGACGCa -3'
miRNA:   3'- -GUCCGGgC-----UCGCGCuCUGGCU---------------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 126061 0.66 0.842611
Target:  5'- aCAGGaucCCCcAGCGCaucucgcacGCCGAGGCGCu -3'
miRNA:   3'- -GUCC---GGGcUCGCGcuc------UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 50280 0.66 0.842611
Target:  5'- uCGGGcCCCGAgaccgccguccGCGCGGcGAUCGcGAgGCa -3'
miRNA:   3'- -GUCC-GGGCU-----------CGCGCU-CUGGCuCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 92517 0.66 0.811029
Target:  5'- -uGGCCCGGugccucgcgcGCGCGuacGGGCgGgcGGGCGCg -3'
miRNA:   3'- guCCGGGCU----------CGCGC---UCUGgC--UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 126243 0.66 0.82713
Target:  5'- uCAcGCCCGuGCgGCG-GAUCGAGcCGCc -3'
miRNA:   3'- -GUcCGGGCuCG-CGCuCUGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 223870 0.66 0.810209
Target:  5'- -cGGCCCG-GCcaucucgGCcGGAUCGAGAUGUa -3'
miRNA:   3'- guCCGGGCuCG-------CGcUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135339 0.66 0.802762
Target:  5'- aAGGUCagGGGcCGCGAGAUCaaggccAGACGCg -3'
miRNA:   3'- gUCCGGg-CUC-GCGCUCUGGc-----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 27919 0.66 0.802762
Target:  5'- gCAGGaaCgCGAGCGCcgccGACaGAGACGCa -3'
miRNA:   3'- -GUCC--GgGCUCGCGcu--CUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 72099 0.66 0.84033
Target:  5'- -cGGCCUGAuCGCcAGACUGgacaggaggacgguGGACGCg -3'
miRNA:   3'- guCCGGGCUcGCGcUCUGGC--------------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 193930 0.66 0.802762
Target:  5'- --cGCCUGAGuCGCGcGGACCaGAgGugGCa -3'
miRNA:   3'- gucCGGGCUC-GCGC-UCUGG-CU-CugCG- -5'
15673 3' -60.7 NC_004065.1 + 41685 0.66 0.842611
Target:  5'- uGGGgCUGAGCaucGCGAGggacGCgGAGACGg -3'
miRNA:   3'- gUCCgGGCUCG---CGCUC----UGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 223901 0.66 0.819154
Target:  5'- --aGUCCGcuCGCGaAGGCCGAGACcaGCg -3'
miRNA:   3'- gucCGGGCucGCGC-UCUGGCUCUG--CG- -5'
15673 3' -60.7 NC_004065.1 + 161027 0.66 0.802762
Target:  5'- -cGGCaUCGAcGUGCaGGGGCCGGucGACGCu -3'
miRNA:   3'- guCCG-GGCU-CGCG-CUCUGGCU--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 186846 0.66 0.811029
Target:  5'- gAGGauCCCGAGUGUGAGAUguuuaucaUGguGGACGCc -3'
miRNA:   3'- gUCC--GGGCUCGCGCUCUG--------GC--UCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.