miRNA display CGI


Results 1 - 20 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 139408 0.69 0.647528
Target:  5'- -cGGCCCGcGCGCagcgaGAGugCGcugcucaaGGACGCu -3'
miRNA:   3'- guCCGGGCuCGCG-----CUCugGC--------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 33891 0.7 0.590154
Target:  5'- cCAGGC--GAGgGUGAGACCGcGGAUGCc -3'
miRNA:   3'- -GUCCGggCUCgCGCUCUGGC-UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 120566 0.7 0.590154
Target:  5'- -cGGCgCGAGCggGCGGGACCuccGGCGCc -3'
miRNA:   3'- guCCGgGCUCG--CGCUCUGGcu-CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 229265 0.7 0.590154
Target:  5'- aAGG-UCGAGCGCGAacCCGcGACGCg -3'
miRNA:   3'- gUCCgGGCUCGCGCUcuGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 88960 0.7 0.609236
Target:  5'- aCGGGCUCGcGCGUGAugguGGCCaccuGGGGCGCc -3'
miRNA:   3'- -GUCCGGGCuCGCGCU----CUGG----CUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 41490 0.7 0.609236
Target:  5'- --cGCCgGGGCGuCGGGACgGGGAgCGCg -3'
miRNA:   3'- gucCGGgCUCGC-GCUCUGgCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 85760 0.7 0.617844
Target:  5'- -cGGCCCGGGUcucucGaccugacauaaguCGGcGACCGAGGCGCg -3'
miRNA:   3'- guCCGGGCUCG-----C-------------GCU-CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 31700 0.7 0.628377
Target:  5'- uCGGuGCCCGAGCGU---GCCGAuGACGg -3'
miRNA:   3'- -GUC-CGGGCUCGCGcucUGGCU-CUGCg -5'
15673 3' -60.7 NC_004065.1 + 60684 0.69 0.647528
Target:  5'- -cGGCCCaccAGgGCGAGACgGugauGGCGCu -3'
miRNA:   3'- guCCGGGc--UCgCGCUCUGgCu---CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 42427 0.71 0.57118
Target:  5'- uGGGaCgUGAcGUGCGAGucgaucaacaGCCGAGACGCg -3'
miRNA:   3'- gUCC-GgGCU-CGCGCUC----------UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 110832 0.72 0.506214
Target:  5'- cCAGGCaCC-AGUGCGGGGCgCGGGcCGCc -3'
miRNA:   3'- -GUCCG-GGcUCGCGCUCUG-GCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 74042 0.72 0.506214
Target:  5'- --cGCCgGAGUGCGAGA-CGAGGCGg -3'
miRNA:   3'- gucCGGgCUCGCGCUCUgGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 74831 0.75 0.349679
Target:  5'- --cGCCCGGGU-CGGGACCGAGGgGCg -3'
miRNA:   3'- gucCGGGCUCGcGCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 112891 0.74 0.375069
Target:  5'- cCAGGCCCGucuccguccggaucaGGUGCGAcACCaGGGCGCg -3'
miRNA:   3'- -GUCCGGGC---------------UCGCGCUcUGGcUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 224038 0.73 0.419522
Target:  5'- gUAGGCCCGAGgGCcauGAcGGCCG-GugGCc -3'
miRNA:   3'- -GUCCGGGCUCgCG---CU-CUGGCuCugCG- -5'
15673 3' -60.7 NC_004065.1 + 103011 0.73 0.427791
Target:  5'- uUAGGUCCGAGCGCGgcacgucgaaAGACaucauGACGCu -3'
miRNA:   3'- -GUCCGGGCUCGCGC----------UCUGgcu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 211340 0.73 0.444612
Target:  5'- aAGGCCUGAGCc---GACCGAGGCGg -3'
miRNA:   3'- gUCCGGGCUCGcgcuCUGGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 185844 0.72 0.479328
Target:  5'- uCGGGUCCGGGgGCGuGA--GGGACGCg -3'
miRNA:   3'- -GUCCGGGCUCgCGCuCUggCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 18131 0.72 0.488214
Target:  5'- cCGGGCCCGc-CGCGGGA-CGGGAUGUu -3'
miRNA:   3'- -GUCCGGGCucGCGCUCUgGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 222622 0.72 0.497178
Target:  5'- -cGGCCCaGAagauGCGCGAGuACCGAGGagggccCGCg -3'
miRNA:   3'- guCCGGG-CU----CGCGCUC-UGGCUCU------GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.