miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 19626 1.1 0.001769
Target:  5'- cCAGGCCCGAGCGCGAGACCGAGACGCc -3'
miRNA:   3'- -GUCCGGGCUCGCGCUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 108154 0.79 0.205748
Target:  5'- gAGGUCCugucGAGCGuCGAcauGACCGAGACGCu -3'
miRNA:   3'- gUCCGGG----CUCGC-GCU---CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 110561 0.78 0.241493
Target:  5'- -cGGCCaGAGCuGCGAGACCGuGACGg -3'
miRNA:   3'- guCCGGgCUCG-CGCUCUGGCuCUGCg -5'
15673 3' -60.7 NC_004065.1 + 141717 0.77 0.276124
Target:  5'- -cGGCCacgugucccaGGGCGCaGAGGuCCGAGACGCa -3'
miRNA:   3'- guCCGGg---------CUCGCG-CUCU-GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 62116 0.76 0.294879
Target:  5'- gCAGGCCCuuccGCGCGGGGCgCGAcagcGGCGCg -3'
miRNA:   3'- -GUCCGGGcu--CGCGCUCUG-GCU----CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 113942 0.75 0.335325
Target:  5'- gCGGcGCUCGGGgGCuGGGACgGAGACGCc -3'
miRNA:   3'- -GUC-CGGGCUCgCG-CUCUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135092 0.75 0.342448
Target:  5'- aGGGCCCGucuccGgGgGAGGCCGAGAgGUg -3'
miRNA:   3'- gUCCGGGCu----CgCgCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 74831 0.75 0.349679
Target:  5'- --cGCCCGGGU-CGGGACCGAGGgGCg -3'
miRNA:   3'- gucCGGGCUCGcGCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 32549 0.74 0.364465
Target:  5'- uCGGGCuCCGA-CGagGAGACCGAGgACGCg -3'
miRNA:   3'- -GUCCG-GGCUcGCg-CUCUGGCUC-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 112891 0.74 0.375069
Target:  5'- cCAGGCCCGucuccguccggaucaGGUGCGAcACCaGGGCGCg -3'
miRNA:   3'- -GUCCGGGC---------------UCGCGCUcUGGcUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 127433 0.74 0.387442
Target:  5'- aGGGCCCgccugaaaGAGCGagagaGAGACCGAGAgGg -3'
miRNA:   3'- gUCCGGG--------CUCGCg----CUCUGGCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 24526 0.74 0.39531
Target:  5'- gGGGCCgCGAGcCGUGAGcucACCGAGugcCGCa -3'
miRNA:   3'- gUCCGG-GCUC-GCGCUC---UGGCUCu--GCG- -5'
15673 3' -60.7 NC_004065.1 + 224038 0.73 0.419522
Target:  5'- gUAGGCCCGAGgGCcauGAcGGCCG-GugGCc -3'
miRNA:   3'- -GUCCGGGCUCgCG---CU-CUGGCuCugCG- -5'
15673 3' -60.7 NC_004065.1 + 103011 0.73 0.427791
Target:  5'- uUAGGUCCGAGCGCGgcacgucgaaAGACaucauGACGCu -3'
miRNA:   3'- -GUCCGGGCUCGCGC----------UCUGgcu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 211340 0.73 0.444612
Target:  5'- aAGGCCUGAGCc---GACCGAGGCGg -3'
miRNA:   3'- gUCCGGGCUCGcgcuCUGGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 93680 0.73 0.453161
Target:  5'- gGGGaUCCGGGUG-GGGugCGGGGCGCu -3'
miRNA:   3'- gUCC-GGGCUCGCgCUCugGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 199176 0.72 0.470521
Target:  5'- uCAGaacGCCCGgcGGCGCGcGAUCGAGAgGCu -3'
miRNA:   3'- -GUC---CGGGC--UCGCGCuCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 135561 0.72 0.470521
Target:  5'- -cGGCUCGAGCGggccgaaguCGGcGGCgGAGACGCg -3'
miRNA:   3'- guCCGGGCUCGC---------GCU-CUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 185844 0.72 0.479328
Target:  5'- uCGGGUCCGGGgGCGuGA--GGGACGCg -3'
miRNA:   3'- -GUCCGGGCUCgCGCuCUggCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 18131 0.72 0.488214
Target:  5'- cCGGGCCCGc-CGCGGGA-CGGGAUGUu -3'
miRNA:   3'- -GUCCGGGCucGCGCUCUgGCUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.