miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 262 0.68 0.7045
Target:  5'- gGGGCCCGcGCGCacucaGAcGGCCGGGGgGg -3'
miRNA:   3'- gUCCGGGCuCGCG-----CU-CUGGCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 5625 0.66 0.819154
Target:  5'- gAGGCUagcacaguuaCGAGCGCcaaGAGcuguACCG-GACGCg -3'
miRNA:   3'- gUCCGG----------GCUCGCG---CUC----UGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 17811 0.67 0.79436
Target:  5'- uCGGaGCCCGAGCaaGGGGaaCGAG-CGCg -3'
miRNA:   3'- -GUC-CGGGCUCGcgCUCUg-GCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 18131 0.72 0.488214
Target:  5'- cCGGGCCCGc-CGCGGGA-CGGGAUGUu -3'
miRNA:   3'- -GUCCGGGCucGCGCUCUgGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 19626 1.1 0.001769
Target:  5'- cCAGGCCCGAGCGCGAGACCGAGACGCc -3'
miRNA:   3'- -GUCCGGGCUCGCGCUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 20441 0.66 0.82713
Target:  5'- -cGGUUCGAGCGauuuugguAGuCCGAGACGUc -3'
miRNA:   3'- guCCGGGCUCGCgc------UCuGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 23251 0.68 0.7045
Target:  5'- -uGGCUCGAGUGUGGuuucuguucgcGAUCGGGGCGa -3'
miRNA:   3'- guCCGGGCUCGCGCU-----------CUGGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 24526 0.74 0.39531
Target:  5'- gGGGCCgCGAGcCGUGAGcucACCGAGugcCGCa -3'
miRNA:   3'- gUCCGG-GCUC-GCGCUC---UGGCUCu--GCG- -5'
15673 3' -60.7 NC_004065.1 + 27720 0.69 0.65709
Target:  5'- gCAGGaaCCCGAgcucGCGCGuGaugcGCgGAGACGCg -3'
miRNA:   3'- -GUCC--GGGCU----CGCGCuC----UGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 27919 0.66 0.802762
Target:  5'- gCAGGaaCgCGAGCGCcgccGACaGAGACGCa -3'
miRNA:   3'- -GUCC--GgGCUCGCGcu--CUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 29923 0.67 0.767529
Target:  5'- gAGGaCCUGGGCguccucuucgccgGCGAGGa-GGGACGCg -3'
miRNA:   3'- gUCC-GGGCUCG-------------CGCUCUggCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 30879 0.67 0.79436
Target:  5'- gCGGGUUCGAGCGCccgcaGGGCguCGGGGuCGCa -3'
miRNA:   3'- -GUCCGGGCUCGCGc----UCUG--GCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 31387 0.7 0.580651
Target:  5'- --uGCCCGAGuCG-GAGACgGAGACGg -3'
miRNA:   3'- gucCGGGCUC-GCgCUCUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 31573 0.67 0.768412
Target:  5'- --cGUCCGAgaugagcuGCGUGAGGuuguCCGAGACGUa -3'
miRNA:   3'- gucCGGGCU--------CGCGCUCU----GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 31700 0.7 0.628377
Target:  5'- uCGGuGCCCGAGCGU---GCCGAuGACGg -3'
miRNA:   3'- -GUC-CGGGCUCGCGcucUGGCU-CUGCg -5'
15673 3' -60.7 NC_004065.1 + 32549 0.74 0.364465
Target:  5'- uCGGGCuCCGA-CGagGAGACCGAGgACGCg -3'
miRNA:   3'- -GUCCG-GGCUcGCg-CUCUGGCUC-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 33891 0.7 0.590154
Target:  5'- cCAGGC--GAGgGUGAGACCGcGGAUGCc -3'
miRNA:   3'- -GUCCGggCUCgCGCUCUGGC-UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 40719 0.67 0.758647
Target:  5'- uUAGaGUCCGAGCuCGAGAgCGAgggagauaauaguGACGCc -3'
miRNA:   3'- -GUC-CGGGCUCGcGCUCUgGCU-------------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 41490 0.7 0.609236
Target:  5'- --cGCCgGGGCGuCGGGACgGGGAgCGCg -3'
miRNA:   3'- gucCGGgCUCGC-GCUCUGgCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 41685 0.66 0.842611
Target:  5'- uGGGgCUGAGCaucGCGAGggacGCgGAGACGg -3'
miRNA:   3'- gUCCgGGCUCG---CGCUC----UGgCUCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.