miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 41774 0.67 0.785829
Target:  5'- aUAGGCCgCGAcucugGCGGGACCGcccGCGCg -3'
miRNA:   3'- -GUCCGG-GCUcg---CGCUCUGGCuc-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 42427 0.71 0.57118
Target:  5'- uGGGaCgUGAcGUGCGAGucgaucaacaGCCGAGACGCg -3'
miRNA:   3'- gUCC-GgGCU-CGCGCUC----------UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 43378 0.67 0.768412
Target:  5'- -cGGCCggcggucuucgCGAGCGCGGaucggcGCCGGGuCGCg -3'
miRNA:   3'- guCCGG-----------GCUCGCGCUc-----UGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 45775 0.7 0.628377
Target:  5'- -cGGCgCCGGGUgGCGuAGACCGuccGACGUg -3'
miRNA:   3'- guCCG-GGCUCG-CGC-UCUGGCu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 47300 0.69 0.656135
Target:  5'- -uGGCCCcGGCGUcgcccguGAGGCCGAucCGCg -3'
miRNA:   3'- guCCGGGcUCGCG-------CUCUGGCUcuGCG- -5'
15673 3' -60.7 NC_004065.1 + 48039 0.69 0.676156
Target:  5'- -uGGCCCGAG---GAGAUCGAGGgGCu -3'
miRNA:   3'- guCCGGGCUCgcgCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 50280 0.66 0.842611
Target:  5'- uCGGGcCCCGAgaccgccguccGCGCGGcGAUCGcGAgGCa -3'
miRNA:   3'- -GUCC-GGGCU-----------CGCGCU-CUGGCuCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 50830 0.69 0.685646
Target:  5'- aCGGGCCCGAagagaaCGUGAacGCCG-GGCGCg -3'
miRNA:   3'- -GUCCGGGCUc-----GCGCUc-UGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 55416 0.67 0.785829
Target:  5'- -cGGCCUGAuGgGCu-GuCCGGGGCGCg -3'
miRNA:   3'- guCCGGGCU-CgCGcuCuGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 59564 0.68 0.731444
Target:  5'- -cGGUCUGAGCuauaaaaGCGAGACUGucuGAuCGCg -3'
miRNA:   3'- guCCGGGCUCG-------CGCUCUGGCu--CU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 59707 0.67 0.768412
Target:  5'- aGGGCgCCGAGCG----GCCGcGGCGCa -3'
miRNA:   3'- gUCCG-GGCUCGCgcucUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 60684 0.69 0.647528
Target:  5'- -cGGCCCaccAGgGCGAGACgGugauGGCGCu -3'
miRNA:   3'- guCCGGGc--UCgCGCUCUGgCu---CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 61688 0.68 0.7045
Target:  5'- gGGGUCCGcAGCGCGucacGuCCGcGGCGUa -3'
miRNA:   3'- gUCCGGGC-UCGCGCu---CuGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 62116 0.76 0.294879
Target:  5'- gCAGGCCCuuccGCGCGGGGCgCGAcagcGGCGCg -3'
miRNA:   3'- -GUCCGGGcu--CGCGCUCUG-GCU----CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 63764 0.7 0.618802
Target:  5'- -cGGCCgCGAGgGCGAGGCCauc-CGCa -3'
miRNA:   3'- guCCGG-GCUCgCGCUCUGGcucuGCG- -5'
15673 3' -60.7 NC_004065.1 + 63879 0.71 0.533724
Target:  5'- uCAGGCUCGAcaCG-GGGAUCGAGAUGCc -3'
miRNA:   3'- -GUCCGGGCUc-GCgCUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 64135 0.67 0.785829
Target:  5'- aGGGCUCGGGUGac-GugCGGGugGUg -3'
miRNA:   3'- gUCCGGGCUCGCgcuCugGCUCugCG- -5'
15673 3' -60.7 NC_004065.1 + 64573 0.68 0.740597
Target:  5'- -uGGUCCGAGUccaGC-AGAcccuguuggauguCCGAGACGCg -3'
miRNA:   3'- guCCGGGCUCG---CGcUCU-------------GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 65015 0.68 0.7045
Target:  5'- gCAGGUCgGAGCGCuccuuGGCCGAcagcgaGCGCg -3'
miRNA:   3'- -GUCCGGgCUCGCGcu---CUGGCUc-----UGCG- -5'
15673 3' -60.7 NC_004065.1 + 66108 0.67 0.785829
Target:  5'- --cGCUgGGGgGCGAcaucACCGAGGCGCu -3'
miRNA:   3'- gucCGGgCUCgCGCUc---UGGCUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.