miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 5' -55.8 NC_004065.1 + 544 0.68 0.919568
Target:  5'- -aGCUUCCGCGAcg-AGCG-GCGcCCg -3'
miRNA:   3'- ucUGGAGGCGCUacaUCGCaCGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 18132 0.67 0.951911
Target:  5'- cGGGCCcgCCGCGGgacgggaUGuUGGCGguauCGUCCg -3'
miRNA:   3'- -UCUGGa-GGCGCU-------AC-AUCGCac--GCAGG- -5'
15673 5' -55.8 NC_004065.1 + 19592 1.12 0.003442
Target:  5'- gAGACCUCCGCGAUGUAGCGUGCGUCCu -3'
miRNA:   3'- -UCUGGAGGCGCUACAUCGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 21661 0.66 0.969517
Target:  5'- aAGACCugUCCGCGGgucuugaaacggcagGUAGCGacgcagucGCcGUCCg -3'
miRNA:   3'- -UCUGG--AGGCGCUa--------------CAUCGCa-------CG-CAGG- -5'
15673 5' -55.8 NC_004065.1 + 23973 0.67 0.948288
Target:  5'- cGGACCggacggaCCGCGAcugcuUGUcgGGCGgGUGUCUg -3'
miRNA:   3'- -UCUGGa------GGCGCU-----ACA--UCGCaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 27767 0.66 0.96625
Target:  5'- gAGGCacgCCGCGAUGaaucugGCGUCCu -3'
miRNA:   3'- -UCUGga-GGCGCUACaucgcaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 30156 0.69 0.868939
Target:  5'- cGGACCcagCCGCGGgaUGUAGCG-GCuGUUa -3'
miRNA:   3'- -UCUGGa--GGCGCU--ACAUCGCaCG-CAGg -5'
15673 5' -55.8 NC_004065.1 + 43758 0.67 0.930033
Target:  5'- cGGAUCUCCGUcucuccaaguGAUGUaucGGCG-GCG-CCg -3'
miRNA:   3'- -UCUGGAGGCG----------CUACA---UCGCaCGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 45139 0.68 0.919568
Target:  5'- -uGCCUCCGCGAac-GGag-GCGUCCu -3'
miRNA:   3'- ucUGGAGGCGCUacaUCgcaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 45783 0.67 0.952303
Target:  5'- -cGCCgCCGCGGcgccggGUGGCGUagacCGUCCg -3'
miRNA:   3'- ucUGGaGGCGCUa-----CAUCGCAc---GCAGG- -5'
15673 5' -55.8 NC_004065.1 + 45991 0.66 0.959691
Target:  5'- cGACCUggGCGccGUGGCG-GCGUUg -3'
miRNA:   3'- uCUGGAggCGCuaCAUCGCaCGCAGg -5'
15673 5' -55.8 NC_004065.1 + 52554 0.67 0.930033
Target:  5'- gGGACa---GCGAUGgagAGUGUGCG-CCg -3'
miRNA:   3'- -UCUGgaggCGCUACa--UCGCACGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 56877 0.75 0.595976
Target:  5'- cGGGCCUCCGCcugGUauccAGCGUGCGgaugaUCCu -3'
miRNA:   3'- -UCUGGAGGCGcuaCA----UCGCACGC-----AGG- -5'
15673 5' -55.8 NC_004065.1 + 61457 0.73 0.684847
Target:  5'- cGACCcgcUCCGUGAUGcgcuGCGccaugGCGUCCa -3'
miRNA:   3'- uCUGG---AGGCGCUACau--CGCa----CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 61704 0.67 0.939604
Target:  5'- -cACgUCCGCGgcGUAGCG-GCGgaugcgagCCa -3'
miRNA:   3'- ucUGgAGGCGCuaCAUCGCaCGCa-------GG- -5'
15673 5' -55.8 NC_004065.1 + 65995 0.71 0.788296
Target:  5'- aGGugCUCagcggcagcaGCGAguUGUacgAGUGUGCGUCCu -3'
miRNA:   3'- -UCugGAGg---------CGCU--ACA---UCGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 67462 0.68 0.914
Target:  5'- cGGCCgaggCgGCGGUGUAcGUGUGCGa-- -3'
miRNA:   3'- uCUGGa---GgCGCUACAU-CGCACGCagg -5'
15673 5' -55.8 NC_004065.1 + 70533 0.66 0.962079
Target:  5'- aAGGCCgCCGCGggGUugcGCcaguucuuucgcauGUGCGUCa -3'
miRNA:   3'- -UCUGGaGGCGCuaCAu--CG--------------CACGCAGg -5'
15673 5' -55.8 NC_004065.1 + 71664 0.66 0.967465
Target:  5'- aGGGCCUCCucagcagcagcagcgGCGgcGgcaacgggAGCGgcGCGUCCu -3'
miRNA:   3'- -UCUGGAGG---------------CGCuaCa-------UCGCa-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 73683 0.68 0.924912
Target:  5'- -aACCUCUGUG-UGUGGUGUGgGUUUu -3'
miRNA:   3'- ucUGGAGGCGCuACAUCGCACgCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.