miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 5' -55.8 NC_004065.1 + 148473 0.66 0.959691
Target:  5'- cAGAUCUCgGgGAcGUGGCGcGUGaUCCu -3'
miRNA:   3'- -UCUGGAGgCgCUaCAUCGCaCGC-AGG- -5'
15673 5' -55.8 NC_004065.1 + 97264 0.67 0.948288
Target:  5'- cGACCUUCGCGccgGUAG-GUGcCGUUg -3'
miRNA:   3'- uCUGGAGGCGCua-CAUCgCAC-GCAGg -5'
15673 5' -55.8 NC_004065.1 + 101502 0.67 0.948288
Target:  5'- aGGugUUCguacaacuCGCGA-GUAGCGUcgGCGUCUa -3'
miRNA:   3'- -UCugGAG--------GCGCUaCAUCGCA--CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 18132 0.67 0.951911
Target:  5'- cGGGCCcgCCGCGGgacgggaUGuUGGCGguauCGUCCg -3'
miRNA:   3'- -UCUGGa-GGCGCU-------AC-AUCGCac--GCAGG- -5'
15673 5' -55.8 NC_004065.1 + 108918 0.67 0.952303
Target:  5'- -cGCCUCCGCGAcgaaAGCGcgcUGCG-CCu -3'
miRNA:   3'- ucUGGAGGCGCUaca-UCGC---ACGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 168207 0.67 0.952303
Target:  5'- -cGCCUCCGaaucCGAUGaAGCGc-CGUCCg -3'
miRNA:   3'- ucUGGAGGC----GCUACaUCGCacGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 199292 0.66 0.954985
Target:  5'- -aGCCUCUGaag-GUGGCGUccacgucguucaacGCGUCCg -3'
miRNA:   3'- ucUGGAGGCgcuaCAUCGCA--------------CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 45991 0.66 0.959691
Target:  5'- cGACCUggGCGccGUGGCG-GCGUUg -3'
miRNA:   3'- uCUGGAggCGCuaCAUCGCaCGCAGg -5'
15673 5' -55.8 NC_004065.1 + 102441 0.66 0.959691
Target:  5'- --cCCUCUGCGAccUGaacGGCGUGcCGUCg -3'
miRNA:   3'- ucuGGAGGCGCU--ACa--UCGCAC-GCAGg -5'
15673 5' -55.8 NC_004065.1 + 136813 0.67 0.944056
Target:  5'- cGGCUgcgUCCcCGAcaGUGGCGUGUGUCUc -3'
miRNA:   3'- uCUGG---AGGcGCUa-CAUCGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 106894 0.67 0.942744
Target:  5'- -cGCgUCCGUGGugaacaguaacuucUGUAGCaggGCGUCCg -3'
miRNA:   3'- ucUGgAGGCGCU--------------ACAUCGca-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 61704 0.67 0.939604
Target:  5'- -cACgUCCGCGgcGUAGCG-GCGgaugcgagCCa -3'
miRNA:   3'- ucUGgAGGCGCuaCAUCGCaCGCa-------GG- -5'
15673 5' -55.8 NC_004065.1 + 139146 0.74 0.625625
Target:  5'- uGGACCUCgcuaagaGCGAUGUcGaCGUGaCGUCCu -3'
miRNA:   3'- -UCUGGAGg------CGCUACAuC-GCAC-GCAGG- -5'
15673 5' -55.8 NC_004065.1 + 61457 0.73 0.684847
Target:  5'- cGACCcgcUCCGUGAUGcgcuGCGccaugGCGUCCa -3'
miRNA:   3'- uCUGG---AGGCGCUACau--CGCa----CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 132571 0.71 0.77035
Target:  5'- aAGGCCUCCuucuUGAUGaAGUGUGCcucGUCCa -3'
miRNA:   3'- -UCUGGAGGc---GCUACaUCGCACG---CAGG- -5'
15673 5' -55.8 NC_004065.1 + 30156 0.69 0.868939
Target:  5'- cGGACCcagCCGCGGgaUGUAGCG-GCuGUUa -3'
miRNA:   3'- -UCUGGa--GGCGCU--ACAUCGCaCG-CAGg -5'
15673 5' -55.8 NC_004065.1 + 67462 0.68 0.914
Target:  5'- cGGCCgaggCgGCGGUGUAcGUGUGCGa-- -3'
miRNA:   3'- uCUGGa---GgCGCUACAU-CGCACGCagg -5'
15673 5' -55.8 NC_004065.1 + 544 0.68 0.919568
Target:  5'- -aGCUUCCGCGAcg-AGCG-GCGcCCg -3'
miRNA:   3'- ucUGGAGGCGCUacaUCGCaCGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 99187 0.67 0.930033
Target:  5'- -cACCUCCucGCGGUaGUGguuacGCGUGUGUCUc -3'
miRNA:   3'- ucUGGAGG--CGCUA-CAU-----CGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 124891 0.67 0.939604
Target:  5'- -uGCgCUCCuCGAUGU-GCGccGCGUCCa -3'
miRNA:   3'- ucUG-GAGGcGCUACAuCGCa-CGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.