miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 126753 0.66 0.98243
Target:  5'- cGCGGCGcAUGGCGacGCGGGuGCAGCGc- -3'
miRNA:   3'- -UGUCGU-UGUCGU--CGUUCuCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 113409 0.66 0.985986
Target:  5'- --cGCGACgucguggccagggAGCuGCGcAGAGCGGCGGCc -3'
miRNA:   3'- uguCGUUG-------------UCGuCGU-UCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 133630 0.66 0.989244
Target:  5'- -gAGCGcaaaacACAGCAGCAcuccCAGCAGCa -3'
miRNA:   3'- ugUCGU------UGUCGUCGUucucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 90249 0.66 0.989244
Target:  5'- uCGGCGAaGGCccGCGAGAGCAGaguGACc -3'
miRNA:   3'- uGUCGUUgUCGu-CGUUCUCGUCg--UUG- -5'
15674 3' -52.3 NC_004065.1 + 161015 0.66 0.98419
Target:  5'- aGCAGUAcgagGCGGCAucgacguGCAGGGGcCGGuCGACg -3'
miRNA:   3'- -UGUCGU----UGUCGU-------CGUUCUC-GUC-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 25680 0.66 0.987776
Target:  5'- cCGGCGA-GGCGGCGAG-GUAGUAGa -3'
miRNA:   3'- uGUCGUUgUCGUCGUUCuCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 192184 0.66 0.987776
Target:  5'- gAUAGUAGgGGUAGCuuuuGAGCGGUucuuGCg -3'
miRNA:   3'- -UGUCGUUgUCGUCGuu--CUCGUCGu---UG- -5'
15674 3' -52.3 NC_004065.1 + 74862 0.66 0.984377
Target:  5'- -aGGCGGCGGUGGUAGacGGGCAggucGCAGCc -3'
miRNA:   3'- ugUCGUUGUCGUCGUU--CUCGU----CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 69034 0.66 0.98323
Target:  5'- gAUAGCAGCAGCAGCccgccgccgccgGAGAugcuggauauguuacGCAcGCAGa -3'
miRNA:   3'- -UGUCGUUGUCGUCG------------UUCU---------------CGU-CGUUg -5'
15674 3' -52.3 NC_004065.1 + 87784 0.66 0.987776
Target:  5'- -aAGCccuGCAGCAGCAucuccauguagAGGGuCAGCAc- -3'
miRNA:   3'- ugUCGu--UGUCGUCGU-----------UCUC-GUCGUug -5'
15674 3' -52.3 NC_004065.1 + 30149 0.66 0.989104
Target:  5'- -gAGCGACcggacccAGCcGCGGGAuGUAGCGGCu -3'
miRNA:   3'- ugUCGUUG-------UCGuCGUUCU-CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 60719 0.66 0.987776
Target:  5'- -gGGC-GCGGCAGuCGAGAGCuccGuCGACg -3'
miRNA:   3'- ugUCGuUGUCGUC-GUUCUCGu--C-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 132140 0.66 0.98243
Target:  5'- gGCGGCGGCGGUGcGCAuc-GCGuGCAACa -3'
miRNA:   3'- -UGUCGUUGUCGU-CGUucuCGU-CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 202492 0.66 0.989245
Target:  5'- gACAGUca-AGCGG-GAGAGCGGCAc- -3'
miRNA:   3'- -UGUCGuugUCGUCgUUCUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 99127 0.66 0.987776
Target:  5'- gACGGCAacGCAGguGCGGccgacGGCGGUAAa -3'
miRNA:   3'- -UGUCGU--UGUCguCGUUc----UCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 211342 0.66 0.987776
Target:  5'- gACGGCgGGCAGCAGCuauauGGA-CGGCGc- -3'
miRNA:   3'- -UGUCG-UUGUCGUCGu----UCUcGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 16864 0.67 0.972783
Target:  5'- cACGGCGAgGGCgAGCcAGAaCAGCAGa -3'
miRNA:   3'- -UGUCGUUgUCG-UCGuUCUcGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 1000 0.67 0.972783
Target:  5'- gGCAGCcgcugucgggaGACgAGCgugccccgcaGGCAGGcGCAGCGACg -3'
miRNA:   3'- -UGUCG-----------UUG-UCG----------UCGUUCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 54046 0.67 0.972783
Target:  5'- gGC-GCGACgaaaGGUucGCGGGAGCGGCAAUc -3'
miRNA:   3'- -UGuCGUUG----UCGu-CGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 141674 0.67 0.972783
Target:  5'- gGCAGCGACGaCAuGCGGGAGCcuauGGCGc- -3'
miRNA:   3'- -UGUCGUUGUcGU-CGUUCUCG----UCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.