miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 59149 0.65 0.990188
Target:  5'- -aGGCGACGaCGGCGAGAguccgaucgggcgcGCGGCGAa -3'
miRNA:   3'- ugUCGUUGUcGUCGUUCU--------------CGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 132140 0.66 0.98243
Target:  5'- gGCGGCGGCGGUGcGCAuc-GCGuGCAACa -3'
miRNA:   3'- -UGUCGUUGUCGU-CGUucuCGU-CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 99127 0.66 0.987776
Target:  5'- gACGGCAacGCAGguGCGGccgacGGCGGUAAa -3'
miRNA:   3'- -UGUCGU--UGUCguCGUUc----UCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 74862 0.66 0.984377
Target:  5'- -aGGCGGCGGUGGUAGacGGGCAggucGCAGCc -3'
miRNA:   3'- ugUCGUUGUCGUCGUU--CUCGU----CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 28017 0.66 0.989245
Target:  5'- gACGGCGGC-GCAGCGucucGAugcGCGGCGGg -3'
miRNA:   3'- -UGUCGUUGuCGUCGUu---CU---CGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 66325 0.66 0.98243
Target:  5'- gGCGGaCAACgcggAGCuGgAGGAGCGGCuGCg -3'
miRNA:   3'- -UGUC-GUUG----UCGuCgUUCUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 87784 0.66 0.987776
Target:  5'- -aAGCccuGCAGCAGCAucuccauguagAGGGuCAGCAc- -3'
miRNA:   3'- ugUCGu--UGUCGUCGU-----------UCUC-GUCGUug -5'
15674 3' -52.3 NC_004065.1 + 126560 0.66 0.986156
Target:  5'- -aAGC-ACGGgGGCGcguGGcGCAGCAGCa -3'
miRNA:   3'- ugUCGuUGUCgUCGU---UCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 41901 0.66 0.98243
Target:  5'- uCAGCAGCuccccggaGGguGCAAGcugguGGCGGUGACc -3'
miRNA:   3'- uGUCGUUG--------UCguCGUUC-----UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 69034 0.66 0.98323
Target:  5'- gAUAGCAGCAGCAGCccgccgccgccgGAGAugcuggauauguuacGCAcGCAGa -3'
miRNA:   3'- -UGUCGUUGUCGUCG------------UUCU---------------CGU-CGUUg -5'
15674 3' -52.3 NC_004065.1 + 124959 0.66 0.984377
Target:  5'- cGCGGCAGCGcCuGCAcgaAGGGCGGCcagaGGCg -3'
miRNA:   3'- -UGUCGUUGUcGuCGU---UCUCGUCG----UUG- -5'
15674 3' -52.3 NC_004065.1 + 30149 0.66 0.989104
Target:  5'- -gAGCGACcggacccAGCcGCGGGAuGUAGCGGCu -3'
miRNA:   3'- ugUCGUUG-------UCGuCGUUCU-CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 104980 0.66 0.98243
Target:  5'- -gAGUAACGGCuGaUGAGAGUcGCAACg -3'
miRNA:   3'- ugUCGUUGUCGuC-GUUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 133630 0.66 0.989244
Target:  5'- -gAGCGcaaaacACAGCAGCAcuccCAGCAGCa -3'
miRNA:   3'- ugUCGU------UGUCGUCGUucucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 75482 0.66 0.986156
Target:  5'- -gGGCGaugGCGGCGGCGAGGaucagggcGCAGUGAa -3'
miRNA:   3'- ugUCGU---UGUCGUCGUUCU--------CGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 113409 0.66 0.985986
Target:  5'- --cGCGACgucguggccagggAGCuGCGcAGAGCGGCGGCc -3'
miRNA:   3'- uguCGUUG-------------UCGuCGU-UCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 192184 0.66 0.987776
Target:  5'- gAUAGUAGgGGUAGCuuuuGAGCGGUucuuGCg -3'
miRNA:   3'- -UGUCGUUgUCGUCGuu--CUCGUCGu---UG- -5'
15674 3' -52.3 NC_004065.1 + 25680 0.66 0.987776
Target:  5'- cCGGCGA-GGCGGCGAG-GUAGUAGa -3'
miRNA:   3'- uGUCGUUgUCGUCGUUCuCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 90249 0.66 0.989244
Target:  5'- uCGGCGAaGGCccGCGAGAGCAGaguGACc -3'
miRNA:   3'- uGUCGUUgUCGu-CGUUCUCGUCg--UUG- -5'
15674 3' -52.3 NC_004065.1 + 161015 0.66 0.98419
Target:  5'- aGCAGUAcgagGCGGCAucgacguGCAGGGGcCGGuCGACg -3'
miRNA:   3'- -UGUCGU----UGUCGU-------CGUUCUC-GUC-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.